Browse Element(s) Details


Os.5167.2.S1_at

Description gb:AK111883.1
DB_XREF= gi:37988546
TID=Os.5167.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060M06, full insert sequence.
FL= gb:AK111883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g068108/11WD repeat domain 48, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009749biological_processresponse to glucose stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0000166molecular_functionnucleotide binding
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5167.2.S1_at--437--10711Chr12:3304292..3304316 (25 bp)
TTGCTGTTTGATCCTGATCTTGGAC
LOC_Os12g06810
Os.5167.2.S1_at--858--4271Chr12:3304280..3304304 (25 bp)
CCTGATCTTGGACTGTTACTTGCTG
LOC_Os12g06810
Os.5167.2.S1_at--501--6431Chr12:3304277..3304301 (25 bp)
GATCTTGGACTGTTACTTGCTGTTT
LOC_Os12g06810
Os.5167.2.S1_at--554--9591Chr12:3304275..3304299 (25 bp)
TCTTGGACTGTTACTTGCTGTTTTG
LOC_Os12g06810
Os.5167.2.S1_at--982--8751NONE
TGTTTTGGGAGTCCCCTGAAATCCT
NONE
Os.5167.2.S1_at--1068--10431NONE
TTGGGAGTCCCCTGAAATCCTTATT
NONE
Os.5167.2.S1_at--765--8011NONE
GGAGTCCCCTGAAATCCTTATTGAC
NONE
Os.5167.2.S1_at--342--8971Chr12:3304232..3304254 (23 bp)
TGAAATCCTTATTGACCCATGCCTT
LOC_Os12g06810
Os.5167.2.S1_at--243--3671Chr12:3304225..3304249 (25 bp)
CTTATTGACCCATGCCTTGCAAGAA
LOC_Os12g06810
Os.5167.2.S1_at--223--10771Chr12:3304221..3304245 (25 bp)
TTGACCCATGCCTTGCAAGAAGTGA
LOC_Os12g06810
Os.5167.2.S1_at--904--3511Chr12:3304215..3304239 (25 bp)
CATGCCTTGCAAGAAGTGAAAGCTT
LOC_Os12g06810
Target Sequence 
TTGCTGTTTGATCCTGATCTTGGACTGTTACTTGCTGTTTTGNCNTTGTTTTGGGAGTCCCCTGAAATCCTTATTGACCC
ATGCCTTGCAAGAAGTGAAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis