Browse Element(s) Details


Os.51921.1.S1_at

Description gb:AK064282.1
DB_XREF= gi:32974300
TID=Os.51921.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G06, full insert sequence.
FL= gb:AK064282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0937011/11histone deacetylase, putative, expressed
LOC_Os11g094402/11Histone deacetylase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed
LOC_Os11g09380OsAffx.18762.1.S1_at11/1111+5028891..5031282transposon protein, putative, unclassified
LOC_Os11g09390Os.2987.3.S1_x_at2/1111+5032186..5032998retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09400OsAffx.9045.1.S1_x_at4/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.9045.1.S1_at3/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_x_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.2.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.5.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420Os.6227.2.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51921.1.S1_at--587--5672Chr11:5060866..5060890 (25 bp)
GACATAGAGATACCCAGCCACGGCT
LOC_Os11g09440
Os.51921.1.S1_at--441--2691Chr11:5024072..5024096 (25 bp)
AAGCTCCATTACAAGACGTCGACAG
LOC_Os11g09370
Os.51921.1.S1_at--907--1031Chr11:5024030..5024054 (25 bp)
AGGTCGAGCAGCACGGAGGTCACCA
LOC_Os11g09370
Os.51921.1.S1_at--474--8512Chr11:5061107..5061131 (25 bp)
TGGAAGACGACGAACCCGCGCAGAG
LOC_Os11g09440
Os.51921.1.S1_at--629--10651Chr11:5023844..5023868 (25 bp)
TTCCCTGGCCTGACGAAGCGTATCA
LOC_Os11g09370
Os.51921.1.S1_at--789--7271Chr11:5023798..5023822 (25 bp)
GTCCACGCAGATTAACCCGAATTCG
LOC_Os11g09370
Os.51921.1.S1_at--579--5211Chr11:5023780..5023804 (25 bp)
GAATTCGCCGGAGTGCAGCTGCTCT
LOC_Os11g09370
Os.51921.1.S1_at--885--3771Chr11:5023759..5023783 (25 bp)
CTCTGCTGCTGTCGGTTGGAGTTAA
LOC_Os11g09370
Os.51921.1.S1_at--623--1351Chr11:5023712..5023736 (25 bp)
AGAGATCCTGTTGGGACTGCAGCCT
LOC_Os11g09370
Os.51921.1.S1_at--729--1971Chr11:5023697..5023721 (25 bp)
ACTGCAGCCTGTTGACTAGTCAATT
LOC_Os11g09370
Os.51921.1.S1_at--803--9251Chr11:5023655..5023679 (25 bp)
TCCTCTCCTCTGAATAACCGATGAT
LOC_Os11g09370
Target Sequence 
GACATAGAGATACCCAGCCACGGCTACGAGCTCATGTACAAGAACCAGGGGAACAAGCTCCATTACAAGACGTCGACAGC
GACGGCGGCGAGAAAGAGGTCGAGCAGCACGGAGGTCACCAAGGGGAAGGTGCTCGAGCACCTGTCGCAGGTCAAGCGCG
CGCCGAGCGTGCAGTTCCAGGAGCGACGCGGCGGCGACAATGCCGCCGGAGTTGGGCTCTACTACGAGCGCCCTCCGAGC
CTGGAAGACGACGAACCCGCGCAGAGGCTGCACCGCCTCTGCTTCCCTGGCCTGACGAAGCGTATCAGGCTCAATGACTG
ACGCCGGCGTCCACGCAGATTAACCCGAATTCGCCGGAGTGCAGCTGCTCTGCTGCTGTCGGTTGGAGTTAAGCCAGTCG
GATAGACACGTGGCAGAGATCCTGTTGGGACTGCAGCCTGTTGACTAGTCAATTTTTTTTTGTTAGTGCTTTCCTCTCCT
CTGAATAACCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis