Browse Element(s) Details


Os.52242.1.S1_at

Description gb:AK065835.1
DB_XREF= gi:32975853
TID=Os.52242.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038N23, full insert sequence.
FL= gb:AK065835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2818411/11expressed protein
LOC_Os06g236704/11transposon protein, putative, Mariner sub-class, expressed
LOC_Os01g359703/11transposon protein, putative, Mariner sub-class
LOC_Os12g093501/11transposon protein, putative, Mariner sub-class
LOC_Os11g269201/11transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g122401/11transposon protein, putative, Mariner sub-class
LOC_Os12g165901/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein
LOC_Os11g28170OsAffx.19048.1.S1_at10/1111+15697431..15699022hypothetical protein
LOC_Os11g28200OsAffx.31178.1.S1_at11/1111+15704006..15714676expressed protein
LOC_Os11g28200Os.52413.1.S1_at10/1111+15704006..15714676expressed protein
LOC_Os11g28200OsAffx.22745.1.S1_x_at1/1111+15704006..15714676expressed protein
LOC_Os11g28184Os.52242.1.S1_at11/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10156.1.S1_x_at2/1111+15704150..15712338expressed protein
LOC_Os11g28184Os.52782.1.S1_at1/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10528.1.S1_x_at1/1111+15704150..15712338expressed protein
LOC_Os11g28210NANA11+15715875..15719213retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28220OsAffx.5018.1.S1_at1/1111+15725381..15726101hypothetical protein
LOC_Os11g28230OsAffx.26069.1.S1_x_at2/1111+15729120..15732712Transposable element protein, putative, Transposase_28
LOC_Os11g28240Os.1709.1.S1_x_at5/1111+15733989..15737594retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52242.1.S1_at--320--75Chr12:9493674..9493698 (25 bp)
ATTGCTAAAGTCCTACCAGCTATTA
LOC_Os12g16590
Os.52242.1.S1_at--150--3134Chr11:15707965..15707989 (25 bp)
AATTTGCCTATGCAGTTTCCCAAAC
LOC_Os11g28184
Os.52242.1.S1_at--288--1193Chr11:15707978..15708195 (25 bp)
AGTTTCCCAAACAGGTCTTGCTTGT
LOC_Os11g28184
Os.52242.1.S1_at--87--10013Chr11:15708259..15708283 (25 bp)
TAGAGCGTCTAGACATTCTCCCCAA
LOC_Os11g28184
Os.52242.1.S1_at--866--91Chr11:15708273..15708297 (25 bp)
ATTCTCCCCAATACACTTAGTTGTG
LOC_Os11g28184
Os.52242.1.S1_at--943--333Chr11:15712018..15712039 (22 bp)
ATAAGATTCCGGCAGTTCCGACGCT
LOC_Os11g28184
Os.52242.1.S1_at--637--92910Chr12:7371153..7371177 (25 bp)
TCCGACGCTCCAGTTTATTTTGAAG
NONE
Os.52242.1.S1_at--331--2431Chr11:15712132..15712156 (25 bp)
AAAACCCATGCTTTTCTCTCAAAAT
LOC_Os11g28184
Os.52242.1.S1_at--32--8571Chr11:15712185..15712209 (25 bp)
TGGTTTTACCCATACTTAGCCTTTG
LOC_Os11g28184
Os.52242.1.S1_at--802--10451Chr11:15712200..15712224 (25 bp)
TTAGCCTTTGTTACCCTGAGTCATT
LOC_Os11g28184
Os.52242.1.S1_at--509--10778Chr12:7371380..7371404 (25 bp)
TTGGTCTAGGATTGCTTAGCCATGC
NONE
Target Sequence 
ATTGCTAAAGTCCTACCAGCTATTATAGCAAGTTGGCCTCGAGAAGAAGCACACAACACTATATGGATTCAGCAGGATAA
TGCTCCCTCTCATGTCCCAGTGGATGATACTCAATTTGCCTATGCAGTTTCCCAAACAGGTCTTGCTTGTTAGAGGTTAC
GAAAGCTGATGGTGGAAATGGATACAAGATTCCTCATATGGGTAAAGAGAGGCTAGAGCGTCTAGACATTCTCCCCAATA
CACTTAGTTGTGGTTTTGAGCTATATGATAAGATTCCGGCAGTTCCGACGCTCCAGTTTATTTTGAAGTGGTCGCCGAGG
TCCCGTCAGCTGAAGAGCAAGGCAATTCATACATATATCATTGATTATATTGAGCCTATTTGCAAAAACCCATGCTTTTC
TCTCAAAATTGCATTACTTTTGTAATGTCATGTGGGATGGTTTTACCCATACTTAGCCTTTGTTACCCTGAGTCATTGAT
AGCTTGGGTTAATAATTTGACAAGATGATTGGTCTAGGATTGCTTAGCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis