Browse Element(s) Details


Os.52316.1.S1_at

Description gb:AK066342.1
DB_XREF= gi:32976360
TID=Os.52316.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068I02, full insert sequence.
FL= gb:AK066342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0362010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52316.1.S1_at--316--9751Chr11:1405423..1405447 (25 bp)
TAATTCCTTGATACCAATGCCTGGC
LOC_Os11g03620
Os.52316.1.S1_at--441--10531Chr11:1405533..1405557 (25 bp)
TTCAGCTCATAGATGGTGCTATCAT
LOC_Os11g03620
Os.52316.1.S1_at--1031--7311NONE
GTGCTATCATATGCAGCGAATTCGT
NONE
Os.52316.1.S1_at--756--4671Chr11:1405619..1405643 (25 bp)
GCGGTGGACATAAGTCTTGCACTTC
LOC_Os11g03620
Os.52316.1.S1_at--267--10731Chr11:1405635..1405659 (25 bp)
TTGCACTTCTCCACAGTACGGTGGA
LOC_Os11g03620
Os.52316.1.S1_at--467--2251Chr11:1405746..1405770 (25 bp)
AAATTCAGCTCTTCGATGGATTCAT
LOC_Os11g03620
Os.52316.1.S1_at--1102--6671Chr11:1405802..1405826 (25 bp)
GTTGCTGTGGTGGTGAATACTCCCT
LOC_Os11g03620
Os.52316.1.S1_at--978--7711Chr11:1405810..1405834 (25 bp)
GGTGGTGAATACTCCCTTGATTTTA
LOC_Os11g03620
Os.52316.1.S1_at--619--731Chr11:1405869..1405893 (25 bp)
ATGTTCCTGGATGTTGTGCGTTCAA
LOC_Os11g03620
Os.52316.1.S1_at--777--2751Chr11:1405926..1405950 (25 bp)
AAGAGCTCAAACTTGGTTGCACCAA
LOC_Os11g03620
Os.52316.1.S1_at--267--311Chr11:1405952..1405976 (25 bp)
ATACTGGTGAAGCTGTCTTGGTCAA
LOC_Os11g03620
Target Sequence 
TAATTCCTTGATACCAATGCCTGGCCCCAAGAGAGGCATTGGAAACCAAGCTCGTGTGCTCATTGAGTTTGACATGAAGA
TCAAGAATGGAGAGACACGAGATGATGATTTTCAGCTCATAGATGGTGCTATCATATGCAGCGAATTCGTGCTTCCCAAT
AGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTGGACATAAGTCTTGCACTTCTCCACAGTACGGTGGAGGC
CACAGTACAAGTTAGCATATCACAAGTGCATGGCAATGGCTTCAGCTTATCTTTATATTCTTATACCAGTAGAATCCCTG
AAAAAATTCAGCTCTTCGATGGATTCATTTCCAAGCCATGTGATCTGAATAGGTTTGTAGTTGCTGTGGTGGTGAATACT
CCCTTGATTTTAATCTTCAAGATTGACAAGAGAGATGGCTCAGATCATGTTCCTGGATGTTGTGCGTTCAAAGCTAGAAC
ACATGGATATGAGTATGACATGCAAGAGCTCAAACTTGGTTGCACCAATATACTGGTGAAGCTGTCTTGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis