Browse Element(s) Details


Os.52527.1.S1_s_at

Description gb:AK067671.1
DB_XREF= gi:32977689
TID=Os.52527.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116J20, full insert sequence.
FL= gb:AK067671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0356011/11oligopeptide transporter 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52527.1.S1_s_at--892--2211Chr06:1371420..1371444 (25 bp)
ACAAGACATTCCCAGGCCAGAACTG
LOC_Os06g03560
Os.52527.1.S1_s_at--211--8451Chr06:1371406..1371430 (25 bp)
GGCCAGAACTGGATCTTACTCATCA
LOC_Os06g03560
Os.52527.1.S1_s_at--318--3351Chr06:1371323..1371347 (25 bp)
CACGACTTGGATACTTGTTGGGTTC
LOC_Os06g03560
Os.52527.1.S1_s_at--499--8351Chr06:1371203..1371227 (25 bp)
GGCGGTCTTAATTTACTTGTGCTTA
LOC_Os06g03560
Os.52527.1.S1_s_at--1012--4871Chr06:1371183..1371207 (25 bp)
GCTTAGGCTTGGAGGACATCAGTCT
LOC_Os06g03560
Os.52527.1.S1_s_at--563--6251Chr06:1371136..1371160 (25 bp)
GATGGGTGTCCTTTGGCTTCTTGTC
LOC_Os06g03560
Os.52527.1.S1_s_at--505--6171Chr06:1371066..1371090 (25 bp)
GAGGATCTCCTATTGCTTCTTGTCC
LOC_Os06g03560
Os.52527.1.S1_s_at--908--1971Chr06:1371040..1371064 (25 bp)
ACTGCTACAGTGTTACCCAGACCTC
LOC_Os06g03560
Os.52527.1.S1_s_at--239--6931Chr06:1370919..1370943 (25 bp)
GTAGTTTCAGGGTTAGTGGTCATAA
LOC_Os06g03560
Os.52527.1.S1_s_at--110--7511Chr06:1370904..1370928 (25 bp)
GTGGTCATAACTTGTATCCTATCAG
LOC_Os06g03560
Os.52527.1.S1_s_at--307--6911Chr06:1370891..1370915 (25 bp)
GTATCCTATCAGTATTCTCGAAAAA
LOC_Os06g03560
Target Sequence 
ACAAGACATTCCCAGGCCAGAACTGGATCTTACTCATCAAGACGCNTGTACTAATTGGTGCCACNTTCCAGATGCNTCCT
GCTACTGCCGTCAACTACACGACTTGGATACTTGTTGGGTTCTTGTCAGGTTATGTGGTCTATAGATATCGACGTGATTG
GTGGGAGAGACACAATTATCTGCTTTCAGGTGCACTGGATGCTGGTTTGGCTTTCATGGCGGTCTTAATTTACTTGTGCT
TAGGCTTGGAGGACATCAGTCTGAACTGGTGGGGAAATGACTTGGATGGGTGTCCTTTGGCTTCTTGTCNNACTGCTAAA
GGTATAGTTGTCAAGGGATGTGCAGTCTATACTTGAGGATCTCCTATTGCTTCTTGTCCCACTGCTACAGTGTTACCCAG
ACCTCCATGGGTGNAAGCCAATATGATTAGATCTAATTTGACCCTTGTCATCTATAAACATCAGTAGAACCAGCTTTGAT
TCATAGCTGGAAATTAGCAATGTAGTTTCAGGGTTAGTGGTCATAACTTGTATCCTATCAGTATTCTCGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52527.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis