Browse Element(s) Details


Os.52811.1.S1_at

Description gb:AK069409.1
DB_XREF= gi:32979433
TID=Os.52811.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018M02, full insert sequence.
FL= gb:AK069409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g457791/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified
LOC_Os05g45810Os.49658.1.S1_at10/115+26452672..26454595Calcineurin B-like protein 4, putative, expressed
LOC_Os05g45820Os.54943.1.S1_at10/115+26454737..26458707heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52811.1.S1_at--1021--8411Chr02:19327418..19327442 (25 bp)
GGCCGATGGTCTGCCACTAACAAGG
NONE
Os.52811.1.S1_at--662--5131Chr02:19327445..19327469 (25 bp)
GCAACTGGCCCACAAACGGCGGAAG
NONE
Os.52811.1.S1_at--293--4692Chr02:19327543..19327567 (25 bp)
GCGGATGCTATGGATGAGGCCCACA
NONE
Os.52811.1.S1_at--78--6311Chr02:19327555..19327579 (25 bp)
GATGAGGCCCACAACAGCAACGGAG
NONE
Os.52811.1.S1_at--448--4251Chr02:19327664..19327688 (25 bp)
CCGGCGACAACGATAGAAGCTGGAG
NONE
Os.52811.1.S1_at--51--2332Chr11:6104623..6104643 (21 bp)
AAAGGGCATTTTGGTCCTATATGAA
NONE
Os.52811.1.S1_at--415--2451Chr02:19327758..19327782 (25 bp)
AAAATTGTCCCATCTACATAGAATG
NONE
Os.52811.1.S1_at--631--851Chr02:19327780..19327804 (25 bp)
ATGGCATGTATCTAATTCTAGGTTC
NONE
Os.52811.1.S1_at--520--3151Chr02:19327793..19327817 (25 bp)
AATTCTAGGTTCTTGCAGTGGCATG
NONE
Os.52811.1.S1_at--908--8331Chr02:19327902..19327926 (25 bp)
GGCTGTTTTCTATAATTGGATCCAT
NONE
Os.52811.1.S1_at--522--10433Chr05:26430745..26430785 (24 bp)
TTAAAATATACTATTACTCCCTCCG
LOC_Os05g45779
Target Sequence 
GGCCGATGGTCTGCCACTAACAAGGCCGCAACTGGCCCACAAACGGCGGAAGCTAGGGCGGTGGCGGTGGCGCAAGCGGA
GGCTGGGGTGTGCGACGGCTGTGGTAGTTGAGGCGGACAACGGCGGCGGATGCTATGGATGAGGCCCACAACAGCAACGG
AGGCGGAGGATGTGGCGCACGACGGCAACGGCGGAGACTGCGGCTGTGATGGGTGATGATAGCAATGATGGAGCTTGAGG
ATGAGGCCGGCGACAACGATAGAAGCTGGAGGATGGAGGTGGAGTTGGAGGAAAGGGCATTTTGGTCCTATATGAAAATA
CGGTGACCAAAAACGTTTTAAAAATTGTCCCATCTACATAGAATGGCATGTATCTAATTCTAGGTTCTTGCAGTGGCATG
GTTCTAATTATCGAATAGTAATGGCATATTTCAAAACCACAGAAATTATAATGGCATGAATCCAATTAACCCATCAAAGA
ATAAGGCTGTTTTCTATAATTGGATCCATTTCATTAAAAGTTTCATAGTTTTAAAATATACTATTACTCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis