Browse Element(s) Details


Os.5306.1.S1_at

Description gb:AK100949.1
DB_XREF= gi:32986158
TID=Os.5306.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139I08, full insert sequence.
FL= gb:AK100949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5721011/11Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g346801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57140OsAffx.23815.1.S1_at11/111+33353777..33354175hypothetical protein
LOC_Os01g57150Os.18458.1.S1_at11/111+33355959..33357337expressed protein
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5306.1.S1_at--1035--5152Chr01:33384722..33384746 (25 bp)
GCAACGTTGCAGTCGGTGTTTTAAC
LOC_Os01g57210
Os.5306.1.S1_at--414--1251Chr01:33384757..33384781 (25 bp)
AGATTCAGCAAGTTCTACACCCGTT
LOC_Os01g57210
Os.5306.1.S1_at--75--1231Chr01:33384767..33384788 (22 bp)
AGTTCTACACCCGTTGATTATGCGG
LOC_Os01g57210
Os.5306.1.S1_at--222--7652Chr01:33385052..33385076 (25 bp)
GGGAGGTTCATTCATACTAGTACAA
LOC_Os01g57210
Os.5306.1.S1_at--679--2532Chr01:33385093..33385117 (25 bp)
AACTAGACATCATTCTTTTTGGCAA
LOC_Os01g57210
Os.5306.1.S1_at--953--3612Chr01:33385107..33385131 (25 bp)
CTTTTTGGCAAAAAACGCGCCAGCG
LOC_Os01g57210
Os.5306.1.S1_at--967--4552Chr01:33385123..33385147 (25 bp)
GCGCCAGCGCCATACAGTTTTTGTA
LOC_Os01g57210
Os.5306.1.S1_at--18--6972Chr01:33385145..33385169 (25 bp)
GTAGCTTGTTGCCATAGCTTTGCAA
LOC_Os01g57210
Os.5306.1.S1_at--836--10751Chr01:33385190..33385214 (25 bp)
TTGACTTGGCTTTTGATTCGGCGTA
LOC_Os01g57210
Os.5306.1.S1_at--807--6931Chr01:33385212..33385236 (25 bp)
GTAGTCCCCTGTTGTACATGTGAGC
LOC_Os01g57210
Os.5306.1.S1_at--369--5932Chr01:33385233..33385257 (25 bp)
GAGCTTGGCTGTGCATAATCTGTAA
LOC_Os01g57210
Target Sequence 
GCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAAT
CAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATNTGAAACAAGCGGGGAGGTTCATTCATA
CTAGTACAACNCAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTA
GCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTA
CATGTGAGCTTGGCTGTGCATAATCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis