Browse Element(s) Details


Os.53181.1.S1_at

Description gb:AK071232.1
DB_XREF= gi:32981255
TID=Os.53181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088E21, full insert sequence.
FL= gb:AK071232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g176904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified
LOC_Os12g17650OsAffx.7622.1.S1_at10/1112+10104467..10107084hypothetical protein
LOC_Os12g17650Os.53180.1.S1_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.23206.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.26961.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53181.1.S1_at--320--4011Chr12:10135622..10135642 (21 bp)
CGTCAACGCCGCCAAGAGGTAAAAT
NONE
Os.53181.1.S1_at--743--5611Chr12:10134905..10134929 (25 bp)
GACAAGCTGCTTCAGCGACCGGTAT
NONE
Os.53181.1.S1_at--6--6391Chr12:10134841..10134865 (25 bp)
GATCCCTGCATCGTCGATTCTACTG
NONE
Os.53181.1.S1_at--792--111Chr12:10134825..10134849 (25 bp)
ATTCTACTGCACACCTGCGAGCATA
NONE
Os.53181.1.S1_at--531--8891Chr12:10134790..10134814 (25 bp)
TGAGGGTGTCGTGGTCCTGCTACAA
NONE
Os.53181.1.S1_at--130--7251NONE
GTCCTGCTACAACCCTAACAAGTGA
NONE
Os.53181.1.S1_at--398--6111Chr12:10133765..10133789 (25 bp)
GAGTGCTTCTTTAAGTAGACAAGGC
NONE
Os.53181.1.S1_at--814--3071Chr12:10133660..10133684 (25 bp)
AATCATCCCGTGTGAATATCTCCAA
LOC_Os12g17690
Os.53181.1.S1_at--616--4371Chr12:10133639..10133663 (25 bp)
CCAAAGAACTGGATAAGGGCTCATT
LOC_Os12g17690
Os.53181.1.S1_at--739--7751Chr12:10133559..10133583 (25 bp)
GGTGATGATTGTACCTTATGCGCAT
LOC_Os12g17690
Os.53181.1.S1_at--635--9151Chr12:10133541..10133565 (25 bp)
TGCGCATCACGCTGACAAGTAACTT
LOC_Os12g17690
Target Sequence 
CGTCAACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCG
CCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGG
TCCTGCTACAACCCTAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTG
AGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATAT
CTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGA
TTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis