Browse Element(s) Details


Os.53266.1.S1_at

Description gb:AK071679.1
DB_XREF= gi:32981702
TID=Os.53266.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108I08, full insert sequence.
FL= gb:AK071679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5201011/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53266.1.S1_at--715--7571Chr03:29796000..29796024 (25 bp)
GGGACGGTCAACCTCGACAGCCTCG
LOC_Os03g52010
Os.53266.1.S1_at--963--6451Chr03:29795968..29795992 (25 bp)
GATCAAGGCGTGGTCCGACTCGCCG
LOC_Os03g52010
Os.53266.1.S1_at--1115--4571Chr03:29795877..29795901 (25 bp)
GCGCTCGACCAGATCTTGAGGATCA
LOC_Os03g52010
Os.53266.1.S1_at--803--511Chr03:29795853..29795877 (25 bp)
ATCGACGCCATCAATCTGAACGCCA
LOC_Os03g52010
Os.53266.1.S1_at--818--9231Chr03:29795814..29795838 (25 bp)
TCCATCAATCGATCGTCTCAGGATG
LOC_Os03g52010
Os.53266.1.S1_at--831--6391Chr03:29795804..29795828 (25 bp)
GATCGTCTCAGGATGTTTTGTACAA
LOC_Os03g52010
Os.53266.1.S1_at--278--231Chr03:29795772..29795796 (25 bp)
ATATTGCTCGCTTCAAGATTTGCTT
LOC_Os03g52010
Os.53266.1.S1_at--175--6531Chr03:29795756..29795780 (25 bp)
GATTTGCTTCTTTTAATCGTTGAGA
LOC_Os03g52010
Os.53266.1.S1_at--798--6911Chr03:29795566..29795590 (25 bp)
GTAGTTAGCTACCTATAGTGGCCGG
LOC_Os03g52010
Os.53266.1.S1_at--920--10071Chr03:29795551..29795575 (25 bp)
TAGTGGCCGGTCAAGTGCATGTTTT
LOC_Os03g52010
Os.53266.1.S1_at--257--2971Chr03:29795482..29795506 (25 bp)
AATGTGTTCCTTTCGTAATAGTACT
LOC_Os03g52010
Target Sequence 
GGGACGGTCAACCTCGACAGCCTCGTCGGGCCGATCAAGGCGTGGTCCGACTCGCCGGAGCAGGTGGTGGAGGTGGTCGA
GCTGCCCGAGGTGTCGCACTCCGGCATCCTCAAGGACAAGAGCGCGCTCGACCAGATCTTGAGGATCATCGACGCCATCA
ATCTGAACGCCACGACCTCNAGCTCCTCCATCAATCGATCGTCTCAGGATGTTTTGTACAATTAGATTATATTGCTCGCT
TCAAGATTTGCTTCTTTTAATCGTTGAGAATTTGCAAGGGGGTACTCCCTCCTCCGTTTCACAATGTAAGTCATTCTATC
ATTTTCTATATTTATATTGATGTTAATGAATCTAGACATATATCTATTTAGATTCGTTAANATTAATANGAATNTGGAAA
ATGCTAGAATGACTTANATTGTGAAACGGATNAAGTAGTTAGCTACCTATAGTGGCCGGTCAAGTGCATGTTTTTTNGCA
CGTTNACAAGCCAATTAAGGCAACAATAAGNGCAATTAAAATGTGTTCCTTTCGTAATAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis