Browse Element(s) Details

Os.53403.1.S1_at

Description

gb:AK072462.1
DB_XREF= gi:32982485
TID=Os.53403.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115E06, full insert sequence.
FL= gb:AK072462.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g39830	11/11	ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g39780	NA	NA	8	+	25054346..25056004	transposon protein, putative, unclassified
LOC_Os08g39790	OsAffx.20387.1.S1_x_at	2/11	8	+	25056508..25057945	retrotransposon protein, putative, unclassified
LOC_Os08g39800	NA	NA	8	+	25060306..25060971	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39810	Os.12946.1.S1_at	9/11	8	+	25061740..25069848	transposon protein, putative, unclassified, expressed
LOC_Os08g39810	Os.53962.1.S1_at	1/11	8	+	25061740..25069848	transposon protein, putative, unclassified, expressed
LOC_Os08g39810	OsAffx.30109.1.S1_at	1/11	8	+	25061740..25069848	transposon protein, putative, unclassified, expressed
LOC_Os08g39810	OsAffx.10596.1.S1_x_at	1/11	8	+	25061740..25069848	transposon protein, putative, unclassified, expressed
LOC_Os08g39820	Os.8570.2.S1_x_at	11/11	8	+	25073923..25077201	expressed protein
LOC_Os08g39830	Os.53403.1.S1_at	11/11	8	+	25078672..25081893	ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39830	Os.53403.1.S1_s_at	11/11	8	+	25078672..25081893	ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39840	Os.4416.1.S1_at	11/11	8	+	25083530..25091220	Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840	Os.49363.2.S1_at	1/11	8	+	25083530..25091220	Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840	Os.56910.1.S1_s_at	1/11	8	+	25083530..25091220	Lipoxygenase 7, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009723	biological_process	response to ethylene stimulus
GO:0009873	biological_process	ethylene mediated signaling pathway
GO:0010182	biological_process	sugar mediated signaling
GO:0045449	biological_process	regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53403.1.S1_at--841--761	1	Chr08:25081145..25081252 (25 bp)	GGGAACATAACCTAGGCAACTCTTT	LOC_Os08g39830
Os.53403.1.S1_at--191--263	1	Chr08:25081240..25081260 (21 bp)	AACCTAGGCAACTCTTTTGCAATTG	LOC_Os08g39830
Os.53403.1.S1_at--667--93	1	Chr08:25081241..25081265 (25 bp)	AGGCAACTCTTTTGCAATTGTAAGA	LOC_Os08g39830
Os.53403.1.S1_at--1014--519	1	Chr08:25081254..25081278 (25 bp)	GCAATTGTAAGAACTGCGACATCCA	LOC_Os08g39830
Os.53403.1.S1_at--234--547	1	Chr08:25081264..25081288 (25 bp)	GAACTGCGACATCCAGAAATGTAAA	LOC_Os08g39830
Os.53403.1.S1_at--78--559	1	Chr08:25081279..25081531 (25 bp)	GAAATGTAAATGGTGGCAGAAGTTC	LOC_Os08g39830
Os.53403.1.S1_at--327--1061	1	Chr08:25081679..25081703 (25 bp)	TTCTGGATTATTTAGCCTGGCTGTA	LOC_Os08g39830
Os.53403.1.S1_at--20--1035	1	Chr08:25081689..25081713 (25 bp)	TTTAGCCTGGCTGTAAAAAAGCTCA	LOC_Os08g39830
Os.53403.1.S1_at--573--43	1	Chr08:25081814..25081838 (25 bp)	ATCTTGATGTATATGAGACATGTTC	LOC_Os08g39830
Os.53403.1.S1_at--413--891	1	Chr08:25081827..25081851 (25 bp)	TGAGACATGTTCATTGCAGCTAGCT	LOC_Os08g39830
Os.53403.1.S1_at--1036--209	1	Chr08:25081831..25081855 (25 bp)	ACATGTTCATTGCAGCTAGCTCAGA	LOC_Os08g39830

Target Sequence

GGGAACATAACCTAGGCAACTCTTTTGCAATTGTAAGAACTGCGACATCCAGAAATGTAAATGGTGGCAGAAGTTCCTGT
ATCGTTCATTAGCTAATCGCTGAGAACTTGAGAAGGGCGCGCTCATCATGGCATGCTGGTGTTCCGCTTAACCTGCTGCA
ACCAGTGAAGGATGCGTCGTGCCAATGATCTGTAATTTGTACCNATCGCTTTTAATTAGCCTGTTCTGGATTATTTAGCC
TGGCTGTAAAAAAGCTCATAGAAACTCGCTTAGCTGGAGAATTTCCTGCAATGCTNGATGGTTGTATACATTTTTACCTG
TGCTACCATGTTAATTTTGCTCAGTTACTCATAGATAAATCTTGATGTATATGAGACATGTTCATTGCAGCTAGCTCAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis