Browse Element(s) Details


Os.8570.2.S1_x_at

Description gb:AK105183.1
DB_XREF= gi:32990392
TID=Os.8570.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A06, full insert sequence.
FL= gb:AK105183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3982011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39770NANA8+25051394..25053373hypothetical protein
LOC_Os08g39780NANA8+25054346..25056004transposon protein, putative, unclassified
LOC_Os08g39790OsAffx.20387.1.S1_x_at2/118+25056508..25057945retrotransposon protein, putative, unclassified
LOC_Os08g39800NANA8+25060306..25060971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39810Os.12946.1.S1_at9/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810Os.53962.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.30109.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.10596.1.S1_x_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39820Os.8570.2.S1_x_at11/118+25073923..25077201expressed protein
LOC_Os08g39830Os.53403.1.S1_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39830Os.53403.1.S1_s_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39840Os.4416.1.S1_at11/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.49363.2.S1_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.56910.1.S1_s_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8570.2.S1_x_at--950--6691Chr08:25074195..25074248 (25 bp)
GTTCGCCAACTCCAAGGGTAAACAT
LOC_Os08g39820
Os.8570.2.S1_x_at--478--5631Chr08:25074746..25074770 (25 bp)
GACACAGTGTCCAAATCCTTCAATG
LOC_Os08g39820
Os.8570.2.S1_x_at--1058--5371Chr08:25075883..25075907 (25 bp)
GAAGCTTAGGAACTCACGTGCTCAA
LOC_Os08g39820
Os.8570.2.S1_x_at--1082--9671Chr08:25075896..25075920 (25 bp)
TCACGTGCTCAAGGGAATGCTGTTT
LOC_Os08g39820
Os.8570.2.S1_x_at--843--6251Chr08:25076821..25076845 (25 bp)
GATGGTGAGCCTTCGATGATGGATA
LOC_Os08g39820
Os.8570.2.S1_x_at--437--7711Chr08:25076874..25076898 (25 bp)
GGTGGACGAGCCAAAACCTTCCAAG
LOC_Os08g39820
Os.8570.2.S1_x_at--797--2651Chr08:25076896..25076920 (25 bp)
AAGCCTGTTCCTGACGCTGATGGTT
LOC_Os08g39820
Os.8570.2.S1_x_at--670--6231Chr08:25076914..25076938 (25 bp)
GATGGTTGGACTACAGTGCCACCTA
LOC_Os08g39820
Os.8570.2.S1_x_at--703--5651Chr08:25077006..25077030 (25 bp)
GACAGTTTGCCAGGAGGTTCTCAGT
LOC_Os08g39820
Os.8570.2.S1_x_at--652--6911Chr08:25077076..25077100 (25 bp)
GTATCCTTTACTTGAACTGAGCTGT
LOC_Os08g39820
Os.8570.2.S1_x_at--890--2551Chr08:25077090..25077114 (25 bp)
AACTGAGCTGTAATCGTGTGACTGA
LOC_Os08g39820
Target Sequence 
GTTCGCCAACTCCAAGGGTAAACATTATTATGAAGATTTGGTGGATATGATGTATGACACAGTGTCCAAATCCTTCAATG
CGGACTTTGAGGATGGTAGTGTTGAAGAGGTCGCTGAACAATTGTTGATTATGCATGAAGAATGCCTGCAAAGCAACTAT
TCTTCAGTTGAGAAGCTTAGGAACTCACGTGCTCAAGGGAATGCTGTTTCCCAGAGTAGAAAGATGGTGGTTGATGGAGA
CGATGATAGCTCAGATGACGAGGACGACGATGACGATGGTGAGCCTTCGATGATGGATAATGAAGCAGGCAGCGCGGAGA
AGATGGCGGTGGACGAGCCAAAACCTTCCAAGCCTGTTCCTGACGCTGATGGTTGGACTACAGTGCCACCTAGGCGTGGT
CGGGGCAAGAATTGAAAGTACAGAAGCAAAAACCTTGGCAAAGACTTTGCACTTGCAAAGACAGTTTGCCAGGAGGTTCT
CAGTGTCAAGTTTTGTTCTAGTTTTTTTTCGANGGATGATTATGTTGTAGTATCCTTTACTTGAACTGAGCTGTAATCGT
GTGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8570.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis