Browse Element(s) Details


Os.53403.1.S1_s_at

Description gb:AK072462.1
DB_XREF= gi:32982485
TID=Os.53403.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115E06, full insert sequence.
FL= gb:AK072462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3983011/11ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39780NANA8+25054346..25056004transposon protein, putative, unclassified
LOC_Os08g39790OsAffx.20387.1.S1_x_at2/118+25056508..25057945retrotransposon protein, putative, unclassified
LOC_Os08g39800NANA8+25060306..25060971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39810Os.12946.1.S1_at9/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810Os.53962.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.30109.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.10596.1.S1_x_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39820Os.8570.2.S1_x_at11/118+25073923..25077201expressed protein
LOC_Os08g39830Os.53403.1.S1_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39830Os.53403.1.S1_s_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39840Os.4416.1.S1_at11/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.49363.2.S1_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.56910.1.S1_s_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53403.1.S1_s_at--430--6031Chr08:25081009..25081033 (25 bp)
GAGATCCTTTCGACAGTGGTACTGC
LOC_Os08g39830
Os.53403.1.S1_s_at--20--7931Chr08:25081062..25081086 (25 bp)
GGATTGCCTTTTGACTTCATTGGTA
LOC_Os08g39830
Os.53403.1.S1_s_at--1058--8571Chr08:25081082..25081106 (25 bp)
TGGTAGTAGTCCAATCCCTGACATC
LOC_Os08g39830
Os.53403.1.S1_s_at--282--3051Chr08:25081094..25081118 (25 bp)
AATCCCTGACATCGGTGTATTGCTA
LOC_Os08g39830
Os.53403.1.S1_s_at--31--6711Chr08:25081528..25081552 (25 bp)
GTTCCTGTATCGTTCATTAGCTAAT
LOC_Os08g39830
Os.53403.1.S1_s_at--59--1471Chr08:25081566..25081590 (25 bp)
AGAAGGGCGCGCTCATCATGGCATG
LOC_Os08g39830
Os.53403.1.S1_s_at--272--4891Chr08:25081601..25081625 (25 bp)
GCTTAACCTGCTGCAACCAGTGAAG
LOC_Os08g39830
Os.53403.1.S1_s_at--1135--1711Chr08:25081616..25081640 (25 bp)
ACCAGTGAAGGATGCGTCGTGCCAA
LOC_Os08g39830
Os.53403.1.S1_s_at--635--4651Chr08:25081629..25081653 (25 bp)
GCGTCGTGCCAATGATCTGTAATTT
LOC_Os08g39830
Os.53403.1.S1_s_at--923--6871Chr08:25081759..25081783 (25 bp)
GTATACATTTTTACCTGTGCTACCA
LOC_Os08g39830
Os.53403.1.S1_s_at--185--7331Chr08:25081775..25081799 (25 bp)
GTGCTACCATGTTAATTTTGCTCAG
LOC_Os08g39830
Target Sequence 
GAGATCCTTTCGACAGTGGTACTGCTGATAAGTTCAATGGGAATTCGTTTGATGGATTGCCTTTTGACTTCATTGGTAGT
AGTCCAATCCCTGACATCGGTGTATTGCTAGATGATGATGATATAATGCCATATCTGGGAACATAACCTAGGCAACTCTT
TTGCAATTGTAAGAACTGCGACATCCAGAAATGTAAATGGTGGCAGAAGTTCCTGTATCGTTCATTAGCTAATCGCTGAG
AACTTGAGAAGGGCGCGCTCATCATGGCATGCTGGTGTTCCGCTTAACCTGCTGCAACCAGTGAAGGATGCGTCGTGCCA
ATGATCTGTAATTTGTACCNATCGCTTTTAATTAGCCTGTTCTGGATTATTTAGCCTGGCTGTAAAAAAGCTCATAGAAA
CTCGCTTAGCTGGAGAATTTCCTGCAATGCTNGATGGTTGTATACATTTTTACCTGTGCTACCATGTTAATTTTGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis