Browse Element(s) Details


Os.12946.1.S1_at

Description gb:AU222529
DB_XREF= gi:15008141
DB_XREF=AU222529
CLONE=C60684
TID=Os.12946.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12946 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566667.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g398109/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39750NANA8+25035915..25037965hypothetical protein
LOC_Os08g39760OsAffx.5954.1.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.4.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.5.S1_x_at6/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.3.S1_x_at3/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.2.S1_at1/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39770NANA8+25051394..25053373hypothetical protein
LOC_Os08g39780NANA8+25054346..25056004transposon protein, putative, unclassified
LOC_Os08g39790OsAffx.20387.1.S1_x_at2/118+25056508..25057945retrotransposon protein, putative, unclassified
LOC_Os08g39800NANA8+25060306..25060971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39810Os.12946.1.S1_at9/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810Os.53962.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.30109.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.10596.1.S1_x_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39820Os.8570.2.S1_x_at11/118+25073923..25077201expressed protein
LOC_Os08g39830Os.53403.1.S1_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39830Os.53403.1.S1_s_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39840Os.4416.1.S1_at11/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.49363.2.S1_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.56910.1.S1_s_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12946.1.S1_at--587--691Chr08:25064975..25064999 (25 bp)
ATGACCTTTACCCTCACAGAGAAAC
LOC_Os08g39810
Os.12946.1.S1_at--998--8891Chr08:25064651..25064675 (25 bp)
TGAGTTCCCGAGGACAGGAGACGTT
LOC_Os08g39810
Os.12946.1.S1_at--790--7311NONE
GGAAGGTGACCTGCTTTACTTTCCA
NONE
Os.12946.1.S1_at--553--4271NONE
CCTGCTTTACTTTCCACCAAAATGG
NONE
Os.12946.1.S1_at--504--7731Chr08:25064571..25064595 (25 bp)
GGTGGCATTACGTTAGATCTCTCTC
LOC_Os08g39810
Os.12946.1.S1_at--1146--1271Chr08:25064557..25064581 (25 bp)
AGATCTCTCTCTACTAGTTTCTCTG
LOC_Os08g39810
Os.12946.1.S1_at--404--1211Chr08:25064542..25064566 (25 bp)
AGTTTCTCTGTTAGCTTCTGGTGGC
LOC_Os08g39810
Os.12946.1.S1_at--505--10611Chr08:25064527..25064551 (25 bp)
TTCTGGTGGCGAACGTCAATTCCTC
LOC_Os08g39810
Os.12946.1.S1_at--262--4291Chr08:25064503..25064527 (25 bp)
CCTCCTCAGGGCTCGTAATGTTATT
LOC_Os08g39810
Os.12946.1.S1_at--827--6791Chr08:25064478..25064502 (25 bp)
GTTTTGATCATCCATGACGTTTGCG
LOC_Os08g39810
Os.12946.1.S1_at--1067--5751Chr08:25064463..25064487 (25 bp)
GACGTTTGCGTTTCTATCATCAGAT
LOC_Os08g39810
Target Sequence 
ATGACCTTTACCCTCACAGAGAAACTATGCTAAGCAATATTAGTCAGGTAGATCTTGACAACATTAACGTAAATGAGTTC
CCGAGGACAGGAGACGTTGAATTCATGGACGGCATATTGGAGGAAGGTGACCTGCTTTACTTTCCACCAAAATGGTGGCA
TTACGTTAGATCTCTCTCTACTAGTTTCTCTGTTAGCTTCTGGTGGCGAACGTCAATTCCTCCTCCTCAGGGCTCGTAAT
GTTATTGTTTTGATCATCCATGACGTTTGCGTTTCTATCATCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis