Browse Element(s) Details


Os.53420.1.S1_x_at

Description gb:AK072539.1
DB_XREF= gi:32982562
TID=Os.53420.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence.
FL= gb:AK072539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4174011/11expressed protein
LOC_Os03g211303/11hypothetical protein
LOC_Os07g040502/11hypothetical protein
LOC_Os04g417501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class
LOC_Os04g41700Os.10085.1.S1_at11/114+24500516..24503611expressed protein
LOC_Os04g41710Os.50694.1.S1_at11/114+24506812..24509613expressed protein
LOC_Os04g41720OsAffx.15708.1.S1_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41720OsAffx.18103.1.S1_x_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53420.1.S1_x_at--485--8712Chr04:24522983..24523007 (25 bp)
TGTCCCCGTGGACGATCCTGTCGAC
LOC_Os04g41740
Os.53420.1.S1_x_at--761--8713Chr07:1714203..1714227 (25 bp)
TGTCGACCACCAAGTCCGTCAAGTA
LOC_Os07g04050
Os.53420.1.S1_x_at--277--7793Chr07:1714333..1714356 (24 bp)
GGTCGTACAGGCTGGAGTTCTCCGT
LOC_Os07g04050
Os.53420.1.S1_x_at--1067--3831Chr04:24523267..24523291 (25 bp)
CTGCTCGAGTTCACGGCCACGGAGA
LOC_Os04g41740
Os.53420.1.S1_x_at--787--10491Chr04:24523276..24523300 (25 bp)
TTCACGGCCACGGAGAAACGGACGC
LOC_Os04g41740
Os.53420.1.S1_x_at--958--7672Chr04:24523301..24523325 (25 bp)
GGGTAGTGTTCGTCAGCATGGCCTA
LOC_Os04g41740
Os.53420.1.S1_x_at--295--3351Chr04:24523329..24523353 (25 bp)
CACGAAGTCCGACGGCACGCTGTGT
LOC_Os04g41740
Os.53420.1.S1_x_at--899--1831Chr04:24523345..24523369 (25 bp)
ACGCTGTGTGGTCCCGTCATCGACG
LOC_Os04g41740
Os.53420.1.S1_x_at--274--531Chr04:24523363..24523387 (25 bp)
ATCGACGACGCGTCGCTCGTCAGTG
LOC_Os04g41740
Os.53420.1.S1_x_at--120--4171Chr04:24523399..24523423 (25 bp)
CGCCGGTTCCTTCTGTAATATTATT
LOC_Os04g41740
Os.53420.1.S1_x_at--483--5691Chr04:24523454..24523478 (25 bp)
GACTTAAAGTTGTCCCATATGAAGG
LOC_Os04g41740
Target Sequence 
TGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTACATCGACGCGGCGCACTACGCTGTGCCGGGCGGCGCC
CGCGCGGTTGAGCTGGTGTCCGGCATGGAGACGGCGATGCTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCT
GGAGTTCTCCGTCGGGGACGCCGGCGACGGGTGCTCCGGGTCCCTGACCGTGCAGGCGTACGCGTCGCGCGGGAGCGTGA
AGGTGACGTACCAGTCGCAGGGCACGGGCGGCTACAAGCGCGGGCTGCTCGAGTTCACGGCCACGGAGAAACGGACGCGG
GTAGTGTTCGTCAGCATGGCCTACACCACGAAGTCCGACGGCACGCTGTGTGGTCCCGTCATCGACGACGCGTCGCTCGT
CAGTGTCCACAGCCACCGCCGGTTCCTTCTGTAATATTATTACTATCGTCAAAGCCACTAGAATTTAAAATGACTTAAAG
TTGTCCCATATGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53420.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis