Browse Element(s) Details


Os.53560.1.S1_at

Description gb:AK073295.1
DB_XREF= gi:32983318
TID=Os.53560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024G10, full insert sequence.
FL= gb:AK073295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g118502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed
LOC_Os04g11900OsAffx.13933.1.S1_x_at1/114+6504942..6506369hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53560.1.S1_at--810--9852Chr04:6480352..6480376 (25 bp)
TACACATCATGTTCGCTTCTTTTGC
NONE
Os.53560.1.S1_at--1076--3552Chr04:6480356..6480380 (25 bp)
CATCATGTTCGCTTCTTTTGCAAAG
NONE
Os.53560.1.S1_at--207--8811Chr02:13363040..13363064 (25 bp)
TGTTCGCTTCTTTTGCAAAGCTGTT
NONE
Os.53560.1.S1_at--881--10731Chr02:13363028..13363052 (25 bp)
TTGCAAAGCTGTTATGCCGCTGCCA
NONE
Os.53560.1.S1_at--365--9174Chr04:6480387..6480411 (25 bp)
TGCCGCTGCCAGTTAATTGCTAATT
NONE
Os.53560.1.S1_at--1148--3153Chr04:6480401..6480425 (25 bp)
AATTGCTAATTGTATATCTCTGAAA
NONE
Os.53560.1.S1_at--926--10412Chr04:6480431..6480546 (25 bp)
TTATACAGATCGATGGGAATACCAC
NONE
Os.53560.1.S1_at--954--3432Chr04:6480436..6480551 (25 bp)
CAGATCGATGGGAATACCACTAATT
NONE
Os.53560.1.S1_at--161--71NONE
ATTGCCATAGTCTAATAGTGGAACC
NONE
Os.53560.1.S1_at--691--2253Chr10:14076053..14076077 (25 bp)
AAATATCTTGCTTTGAGCTTTTCAA
NONE
Os.53560.1.S1_at--527--8912Chr04:6482343..6482367 (25 bp)
TGAGCTTTTCAAGTGTTTATCAAGC
LOC_Os04g11850
Target Sequence 
TACACATCATGTTCGCTTCTTTTGCAAAGCTGTTATGCCGCTGCCAGTTAATTGCTAATTGTATATCTCTGAAATTAATT
TATACAGATCGATGGGAATACCACTAATTTAAGTGCTCTCGAGTTAAAGAAGATAGCAAGCTTGGATGAGGTATGCTTTG
CTCAATTGTAAGCAGTAGCAAGCTAAGGTTCAACAGAACCATGAGTACAAGCAGCGGAAGGATGCATCAATCTACAATTG
CCATAGTCTAATAGTGGAACCCTTTCCTTGAGGGAATTCCATGAAAGATATTGGTCTCCAGATTTTAAGATTGGTAGATC
CTTTCGTGGCTGCCACTTCAACTGCAGATCACATGAACTTCTGTGGACCCACGGCAGGAGCTGTATACACCTCATTGGTG
ATCATGTAAATGCTATTTTTAGTTGCTGGCCATGAAGGATATATTTGAAGTATTGTTGGTGAAGATCTGAGTCTTTTTTC
CTGATAAGATATTGTAGGCTGTGGGGTTTAATTCAATACCATAAATACAAATATCTTGCTTTGAGCTTTTCAAGTGTTTA
TCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis