Browse Element(s) Details


Os.53850.1.S1_at

Description gb:AK100391.1
DB_XREF= gi:32985600
TID=Os.53850.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086A12, full insert sequence.
FL= gb:AK100391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4077010/11Pre-SET motif family protein, expressed
LOC_Os06g436801/11ankryin repeat S-palmitoyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53850.1.S1_at--1130--2351NONE
AAACCACAGGTGCTTTGATGCTAAT
NONE
Os.53850.1.S1_at--691--311Chr02:24710328..24710352 (25 bp)
ATACCTGTTGAGATCGAGACGCCCG
LOC_Os02g40770
Os.53850.1.S1_at--933--151Chr02:24710359..24710473 (25 bp)
ATTATTACCATCTGGCGTTCTTCAC
LOC_Os02g40770
Os.53850.1.S1_at--145--7231Chr02:24710795..24710819 (25 bp)
GTCGACCATCCTGTGAAGGCATTCA
LOC_Os02g40770
Os.53850.1.S1_at--639--4672Chr06:26297391..26297410 (20 bp)
GCGGGTTTAACCTATGAATTCTCTA
LOC_Os06g43680
Os.53850.1.S1_at--690--3151Chr02:24711090..24711114 (25 bp)
AATTCTCTACTCTGCTATTCAAGTG
LOC_Os02g40770
Os.53850.1.S1_at--266--5871Chr02:24711134..24711158 (25 bp)
GAGCCATTGATGGTATCGTCCAGAA
LOC_Os02g40770
Os.53850.1.S1_at--996--1571Chr02:24711248..24711272 (25 bp)
AGCTCATACGAACTGCTGTCCTTTT
LOC_Os02g40770
Os.53850.1.S1_at--666--10251Chr02:24711273..24711297 (25 bp)
TTTCCAAGCTTGGTTGCCCGCAAAG
LOC_Os02g40770
Os.53850.1.S1_at--959--2711Chr02:24711295..24711319 (25 bp)
AAGCAGTATGCTTGGTTGCCCGTTC
LOC_Os02g40770
Os.53850.1.S1_at--666--8511Chr02:24711359..24711383 (25 bp)
TGGAATGTGAACTCTCTGCCATGAT
LOC_Os02g40770
Target Sequence 
AAACCACAGGTGCTTTGATGCTAATATTATAGGAATACCTGTTGAGATCGAGACGCCCGACCACCATTATTACCATCTGG
CGTTCTTCACAACAAGGATAATAGAGCCTTTTGAGGAACTCACATGGGACTATGGGATTGATTTTGATGATGTCGACCAT
CCTGTGAAGGCATTCAAATGTCATTGCGGAAGTGAGTTTTGCCGAGACAAAACGCGCAGATCTAAATCGAGGGCGCGGGT
TTAACCTATGAATTCTCTACTCTGCTATTCAAGTGATTCAAGGAAGTCAATGCAGAGCCATTGATGGTATCGTCCAGAAA
GATGATATAGTAATTTTTCTCTGGAATAGGATAAACAATCCAGATTCCAGAGTTACAGACTGCTGGTTCAGCACTTAAAT
ATTCCAACAGCTCATACGAACTGCTGTCCTTTTTTTCCAAGCTTGGTTGCCCGCAAAGCAGTATGCTTGGTTGCCCGTTC
TTTGTTCCTTTTACCAATACCAAGTGATGTAAAGAATTCTGGAATGTGAACTCTCTGCCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis