Browse Element(s) Details


Os.53907.1.S1_at

Description gb:AK100743.1
DB_XREF= gi:32985952
TID=Os.53907.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118F07, full insert sequence.
FL= gb:AK100743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0258010/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g025104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02530OsAffx.30783.1.S1_at11/1111+786624..787865WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02540OsAffx.30784.1.S1_s_at11/1111+792117..794609WRKY DNA binding domain containing protein, expressed
LOC_Os11g02550Os.52895.1.S1_x_at6/1111+800633..804507expressed protein
LOC_Os11g02550Os.9085.1.S1_at5/1111+800633..804507expressed protein
LOC_Os11g02570Os.48066.1.S1_at1/1111+811089..812334hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02580Os.53907.1.S1_at10/1111+812847..814796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02590OsAffx.22759.1.S1_at6/1111+815731..818034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53907.1.S1_at--503--10832Chr12:856055..856079 (25 bp)
TTGTGGCAGCTACGATGCTACCATT
LOC_Os12g02510
Os.53907.1.S1_at--494--6252Chr12:856235..856256 (22 bp)
GATGGTTTACCAACATTGCCTGAGA
LOC_Os12g02510
Os.53907.1.S1_at--1058--4772Chr12:856307..856331 (25 bp)
GCTGCCCTGAGACCAGAATTCCAGA
LOC_Os12g02510
Os.53907.1.S1_at--141--6552Chr12:856338..856362 (25 bp)
GATTATCCCAACAGAGTCCTGAAGA
LOC_Os12g02510
Os.53907.1.S1_at--91--952Chr12:856685..856709 (25 bp)
AGGAATCAGTACTCGCTTCAATGCT
NONE
Os.53907.1.S1_at--167--632Chr12:856705..856729 (25 bp)
ATGCTGATGCGTCCATGGCCTGTGA
NONE
Os.53907.1.S1_at--1052--8452Chr12:856720..856744 (25 bp)
TGGCCTGTGACAGCTATTAGCACTG
NONE
Os.53907.1.S1_at--987--5651NONE
GACAGGACGTGACCACATGCTGGAC
NONE
Os.53907.1.S1_at--966--5812Chr12:856823..856846 (24 bp)
GACCCTCAGCAGCAAGATTCCATGA
NONE
Os.53907.1.S1_at--936--1251Chr11:814632..814656 (25 bp)
AGATACGGATCATAGCCCCTTTTTT
LOC_Os11g02580
Os.53907.1.S1_at--18--10372Chr12:856902..856926 (25 bp)
TTTTTCAGCACCAGAACAGCTCTTT
NONE
Target Sequence 
TTGTGGCAGCTACGATGCTACCATTTGGACTTCAAACTGACGAAGATAAGAAAGATGGTTTACCAACATTGCCTGAGAAT
GAGATCAATTTGATATTCGGCACAGGAGCAGATGATCCTCCAACAACTGCTGCCCTGAGACCAGAATTCCAGAGAGAGAG
ATTATCCCAACAGAGTCCTGAAGAGGAATCAGTACTCGCTTCAATGCTGATGCGTCCATGGCCTGTGACAGCTATTAGCA
CTGCAAGCTTTGAAGGAGACGATGAGAGACTAAATCGAATCAAACGGGTTTTCATAAAGACAGGACGTGACCACATGCTG
GACCCTCAGCAGCAAGATTCCATGATCAAGAAGTGGCCGCCCAGTGAGGTTTTGGAAATAGATACGGATCATAGCCCCTT
TTTTTCAGCACCAGAACAGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis