Browse Element(s) Details


Os.54083.1.S1_at

Description gb:AK101764.1
DB_XREF= gi:32986973
TID=Os.54083.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064D18, full insert sequence.
FL= gb:AK101764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4888011/11Chloride channel protein CLC-f, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005247molecular_functionvoltage-gated chloride channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54083.1.S1_at--1083--91Chr02:29894142..29894164 (23 bp)
ATTCTATTGGTCACTGCTTACGGGA
LOC_Os02g48880
Os.54083.1.S1_at--211--6191Chr02:29893935..29893959 (25 bp)
GAGGACTTCCATCTCATAGCAAATG
LOC_Os02g48880
Os.54083.1.S1_at--685--10211Chr02:29893883..29893907 (25 bp)
TATTACACCACATCAATCGCATGCA
LOC_Os02g48880
Os.54083.1.S1_at--842--2511Chr02:29893799..29893823 (25 bp)
AACTTGTACAGATTTGAGGCTCCTC
LOC_Os02g48880
Os.54083.1.S1_at--436--8311Chr02:29893737..29893761 (25 bp)
GGCTAGCTAGCCAATTTTGCAATAG
LOC_Os02g48880
Os.54083.1.S1_at--794--8591Chr02:29893706..29893730 (25 bp)
TGGTCCATTCTTGTTGCGAAGCAAC
LOC_Os02g48880
Os.54083.1.S1_at--2--1491Chr02:29893687..29893711 (25 bp)
AGCAACTTCTACTTCACACGGGAGG
LOC_Os02g48880
Os.54083.1.S1_at--162--2571Chr02:29893584..29893608 (25 bp)
AACTGTGTAACATCCTGTTGCTGGG
LOC_Os02g48880
Os.54083.1.S1_at--490--5391Chr02:29893560..29893584 (25 bp)
GAAGCATCATATGCGCCAGCTTGTA
LOC_Os02g48880
Os.54083.1.S1_at--1156--4491Chr02:29893474..29893498 (25 bp)
GCCGATGTTGTAGGTTGTAGCGTCA
LOC_Os02g48880
Os.54083.1.S1_at--508--7051Chr02:29893441..29893465 (25 bp)
GTAACACTTTATATCAGCACTTGAA
LOC_Os02g48880
Target Sequence 
ATTCTATTGGTCACTGCTTACGGGAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATA
GCAAATGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATATCCTTAAGGCATT
TTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACAGATTTGAGGCTCCTCTACAAAGAATTAAATTG
CCATCTGAGGAAATTATTCAGGCTAGCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCT
ACTTCACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATGTATATCTTGTAC
CTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAG
AAACTAGTGTAATAAAGTGTGCAGCAGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAA
CACTTTATATCAGCACTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis