Browse Element(s) Details


Os.54096.1.S1_at

Description gb:AK101905.1
DB_XREF= gi:32987114
TID=Os.54096.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071E06, full insert sequence.
FL= gb:AK101905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g559747/11deoxycytidylate deaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54096.1.S1_at--1060--9351Chr01:32563890..32563914 (25 bp)
TCTGACAATAAGCTACCCTGGGCAA
LOC_Os01g55974
Os.54096.1.S1_at--106--8971Chr01:32563888..32563912 (25 bp)
TGACAATAAGCTACCCTGGGCAAAG
LOC_Os01g55974
Os.54096.1.S1_at--352--351Chr01:32563888..32563907 (20 bp)
ATAAGCTACCCTGGGCAAAGAAATC
LOC_Os01g55974
Os.54096.1.S1_at--429--9951Chr01:32563677..32563901 (25 bp)
TACCCTGGGCAAAGAAATCTGCCAA
LOC_Os01g55974
Os.54096.1.S1_at--1016--3891Chr01:32563673..32563897 (25 bp)
CTGGGCAAAGAAATCTGCCAAGGGA
LOC_Os01g55974
Os.54096.1.S1_at--452--3211Chr01:32563655..32563679 (25 bp)
CAAGGGAGATCCATTGGAGACAAAA
LOC_Os01g55974
Os.54096.1.S1_at--355--6371NONE
GATCCATTGGAGACAAAATACCCCT
NONE
Os.54096.1.S1_at--146--31NONE
ATTGGAGACAAAATACCCCTATGTT
NONE
Os.54096.1.S1_at--105--8071NONE
GGAGACAAAATACCCCTATGTTGTT
NONE
Os.54096.1.S1_at--1049--3271NONE
CAAAATACCCCTATGTTGTTCATGC
NONE
Os.54096.1.S1_at--185--9671Chr01:32560872..32560987 (25 bp)
TCAGCGGCTGGACAGAAATTATATG
LOC_Os01g55974
Target Sequence 
TCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGC
TGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis