Browse Element(s) Details


Os.54216.1.S1_at

Description gb:AK102572.1
DB_XREF= gi:32987781
TID=Os.54216.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097M07, full insert sequence.
FL= gb:AK102572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g581409/11Elongation factor Tu C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54216.1.S1_at--115--10771Chr04:34408033..34408057 (25 bp)
TTGACCCTAGTCATATCATGCCTGG
LOC_Os04g58140
Os.54216.1.S1_at--789--6091NONE
GAGTCATATGCCATCCAGGTTATCC
NONE
Os.54216.1.S1_at--754--3471NONE
CAGGTTATCCTGTGTCCGTGGCTTC
NONE
Os.54216.1.S1_at--699--4251Chr04:34407976..34408000 (25 bp)
CCGTGGCTTCTTGCTTGGAGCTAAA
LOC_Os04g58140
Os.54216.1.S1_at--340--171Chr04:34407950..34407974 (25 bp)
ATTTTGGTCCTAGATATCACTGTAC
LOC_Os04g58140
Os.54216.1.S1_at--663--6611Chr04:34407805..34407941 (25 bp)
GTTGGCTTGCAGTTTGAGCTCCACA
LOC_Os04g58140
Os.54216.1.S1_at--108--3811Chr04:34407787..34407811 (25 bp)
CTCCACATCCATCATGCGAAGGTGT
LOC_Os04g58140
Os.54216.1.S1_at--432--891Chr04:34407522..34407546 (25 bp)
AGGCCGAGTGTTCCTACGATCTCAG
LOC_Os04g58140
Os.54216.1.S1_at--1093--2471Chr04:34407494..34407518 (25 bp)
AACACCATCGCGGTTGGCATTGTGA
LOC_Os04g58140
Os.54216.1.S1_at--1067--5911Chr04:34407458..34407482 (25 bp)
GAGCAGGCTTAGTTCCAGTGGTTTA
LOC_Os04g58140
Os.54216.1.S1_at--429--5511Chr04:34407337..34407361 (25 bp)
GAAAAGGGCCCTGTCATGAAACAAT
LOC_Os04g58140
Target Sequence 
TTGACCCTAGTCATATCATGCCTGGCGGAGTCATATGCCATCCAGGTTATCCTGTGTCCGTGGCTTCTTGCTTGGAGCTA
AAAATTTTGGTCCTAGATATCACTGTACCAATACTGGTTGGCTTGCAGTTTGAGCTCCACATCCATCATGCGAAGGTGTC
TGCAAGCATGGTGAAAATACTGTCATTGCTGGAGCAGAAGACCGGCAAAGCCTCAAAGAAGATACCACGATTTCTCACCT
CGAGACAGACTGCTGTAATCGAGGTGAAGCTGGAGAAAGAGGTATGCGTGGAAGAATTCTCAAACCTGAAAGCGCTAGGC
CGAGTGTTCCTACGATCTCAGGGAAACACCATCGCGGTTGGCATTGTGAGCCGAGTACGAGAGCAGGCTTAGTTCCAGTG
GTTTAATCAAACATAACATGTATACAAGTTGTATGTGGTAGATCAGTACGTTATAATCAGTAATACGGAGTAGAAAACGT
GCTGGTTATTCACGTCGAGGTGAAAAGGGCCCTGTCATGAAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis