Browse Element(s) Details


Os.54267.1.S1_at

Description gb:AK102937.1
DB_XREF= gi:32988146
TID=Os.54267.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114J19, full insert sequence.
FL= gb:AK102937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1459010/11DNA replication licensing factor MCM6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14550OsAffx.4335.1.S1_s_at11/115+8256273..8270285Phosphatidylinositol 3-kinase tor2, putative, expressed
LOC_Os05g14560Os.14491.2.S1_x_at3/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.47463.1.S1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.41934.1.A1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14570OsAffx.28030.1.S1_s_at11/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.3.S1_at8/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.2.S1_x_at5/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.1.S1_x_at4/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14580OsAffx.14692.1.S1_at11/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.2.S1_at4/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.1.S1_at1/115+8284019..8285801hypothetical protein
LOC_Os05g14590Os.54267.1.S1_at10/115+8292205..8298700DNA replication licensing factor MCM6, putative, expressed
LOC_Os05g14600NANA5+8299488..8303111retrotransposon protein, putative, unclassified
LOC_Os05g14610NANA5+8303784..8307299hypothetical protein
LOC_Os05g14620NANA5+8307955..8308290prpol, putative
LOC_Os05g14629OsAffx.8338.1.S1_x_at1/115+8308685..8309563NA
LOC_Os05g14629OsAffx.22240.1.S1_x_at1/115+8308685..8309563NA
LOC_Os05g14640NANA5+8311811..8314447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14650NANA5+8314993..8316568retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14660NANA5+8318544..8318978hypothetical protein
LOC_Os05g14670NANA5+8319812..8321436retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54267.1.S1_at--368--3411Chr05:8297896..8297920 (25 bp)
CAGCAGAATGCCCAAGGAGCCTATA
LOC_Os05g14590
Os.54267.1.S1_at--1121--951Chr05:8297910..8297934 (25 bp)
AGGAGCCTATAGTTCTACAGCAGAG
LOC_Os05g14590
Os.54267.1.S1_at--425--5331Chr05:8297944..8297968 (25 bp)
GAAGTGAAGTGCATCAAGGCCATCA
LOC_Os05g14590
Os.54267.1.S1_at--983--7991Chr05:8298207..8298231 (25 bp)
GGATGGCCATCTCATAGTGATAGAC
LOC_Os05g14590
Os.54267.1.S1_at--329--251Chr05:8298226..8298250 (25 bp)
ATAGACGAAGGAGCAGCCCCAGCGG
LOC_Os05g14590
Os.54267.1.S1_at--1010--5931Chr05:8298282..8298306 (25 bp)
GAGCAGAATCCTGGCAGTTAATCCG
LOC_Os05g14590
Os.54267.1.S1_at--653--3851NONE
CTGAATTATGGTACGCAGCTAACAC
NONE
Os.54267.1.S1_at--871--9751Chr05:8298550..8298574 (25 bp)
TAATCGGTAGTGTGCCTGTGTACAT
LOC_Os05g14590
Os.54267.1.S1_at--1155--5211Chr05:8298626..8298650 (25 bp)
GAATTTTCAAGTGCTTGCTGTGCTT
LOC_Os05g14590
Os.54267.1.S1_at--200--9131Chr05:8298641..8298665 (25 bp)
TGCTGTGCTTCTAACGTGTATCATT
LOC_Os05g14590
Os.54267.1.S1_at--956--8811Chr05:8298676..8298700 (25 bp)
TGATTCGAGAAACGTACCTTTGGCT
LOC_Os05g14590
Target Sequence 
CAGCAGAATGCCCAAGGAGCCTATAGTTCTACAGCAGAGGTGAAGGAAGAAGTGAAGTGCATCAAGGCCATCATAGAGAG
GTTAATACAGAGGGATGGCCATCTCATAGTGATAGACGAAGGAGCAGCCCCAGCGGCTGACGACGGTGCTGCACGAAGAA
CATCAGAGAGCAGAATCCTGGCAGTTAATCCGAACTATGTCATCGATTAACCATCTGAATTATGGTACGCAGCTAACACA
ATCCAATCGATGTGGTTAACCGATAGAACCAAGAGTAGATTCTAGTGAGAACCCCTGGTGGGTTATGCTATGCACTAGAC
ATGTACCATTTCCAACTGTGGTAGTCTTTGCAATTGAGTATATGATCTCTTGACAAATTGTACAATTAATTCTTGGAAGC
AAAGGTGTAGTCAGAGTTATAGTTGATGATAACTATAATCGGTAGTGTGCCTGTGTACATTTTCTTAGAGTTGGTTGAAC
TATGTGAGGGCTTTGGAGTTTGGAGAAGCTTGAATTTTCAAGTGCTTGCTGTGCTTCTAACGTGTATCATTCAGATTCAG
ATGATTCGAGAAACGTACCTTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis