Browse Element(s) Details


Os.54313.1.S1_at

Description gb:AK103277.1
DB_XREF= gi:32988486
TID=Os.54313.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124L02, full insert sequence.
FL= gb:AK103277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5955010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54313.1.S1_at--1126--3731NONE
CTCACCAGTACAAGGCCATTACATC
NONE
Os.54313.1.S1_at--570--10251Chr03:33838273..33838297 (25 bp)
TTTTTTGATAGATGGTACGAACGTA
LOC_Os03g59550
Os.54313.1.S1_at--654--1811Chr03:33838289..33838313 (25 bp)
ACGAACGTAGTCTTAACCGATGTAT
LOC_Os03g59550
Os.54313.1.S1_at--287--4051Chr03:33838306..33838330 (25 bp)
CGATGTATGGTGTGATATATCTTCC
LOC_Os03g59550
Os.54313.1.S1_at--132--7411Chr03:33838317..33838341 (25 bp)
GTGATATATCTTCCAGATCCAGCCC
LOC_Os03g59550
Os.54313.1.S1_at--416--8831Chr03:33838352..33838376 (25 bp)
TGATTCTGCTATCCTTATATATCTG
LOC_Os03g59550
Os.54313.1.S1_at--1029--8971Chr03:33838403..33838427 (25 bp)
TGAACTATGTTCTCGGTTGCTGGCC
LOC_Os03g59550
Os.54313.1.S1_at--1049--10571Chr03:33838412..33838436 (25 bp)
TTCTCGGTTGCTGGCCTGTGGTAGA
LOC_Os03g59550
Os.54313.1.S1_at--490--6931Chr03:33838432..33838456 (25 bp)
GTAGAGGCTGTTGTACTGACTGAGT
LOC_Os03g59550
Os.54313.1.S1_at--978--9911Chr03:33838445..33838469 (25 bp)
TACTGACTGAGTACGCTAGCTAGAA
LOC_Os03g59550
Os.54313.1.S1_at--888--7451Chr03:33838503..33838527 (25 bp)
GTGTCTGCCGACTTAAAAGCCTACT
LOC_Os03g59550
Target Sequence 
CTCACCAGTACAAGGCCATTACATCGGCGATCTCGGACTCCACCTCGCAGGCTTGCTGCCTTGACATGTTGACTGGGAGC
TACTATGTCCGCAATCCTGAATGTTCTCGGTCTGTGTTTTTTGATAGATGGTACGAACGTAGTCTTAACCGATGTATGGT
GTGATATATCTTCCAGATCCAGCCCCCCTGAGTCTTGATTCTGCTATCCTTATATATCTGNACTAAGTTTGATCAACTTT
GTTTGTTGAACTATGTTCTCGGTTGCTGGCCTGTGGTAGAGGCTGTTGTACTGACTGAGTACGCTAGCTAGAAGGTATAT
TGTGTAGTGATGACGTTGAGATGGAAGTGTCTGCCGACTTAAAAGCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis