Browse Element(s) Details


Os.54326.1.S1_at

Description gb:AK103382.1
DB_XREF= gi:32988591
TID=Os.54326.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127F11, full insert sequence.
FL= gb:AK103382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0989010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54326.1.S1_at--761--10651Chr08:5700644..5700668 (25 bp)
TTCCCGATGAGGTCGTTCCGGTAGA
LOC_Os08g09890
Os.54326.1.S1_at--166--10671Chr08:5700629..5700653 (25 bp)
TTCCGGTAGATGAGATGGCCGCATC
LOC_Os08g09890
Os.54326.1.S1_at--749--9071NONE
TGCTCCATCTACTGCGGTGTTCGCA
NONE
Os.54326.1.S1_at--44--1851Chr08:5700540..5700564 (25 bp)
ACGCTTATCACCTTCTCCAGGAGAG
LOC_Os08g09890
Os.54326.1.S1_at--508--7231Chr08:5700434..5700458 (25 bp)
GTCGCAGTGTGCGTCAAGCGCTTCA
LOC_Os08g09890
Os.54326.1.S1_at--196--5971Chr08:5700348..5700372 (25 bp)
GAGAAGGATACTGCTGTCCCAGCTG
LOC_Os08g09890
Os.54326.1.S1_at--580--1791Chr08:5700316..5700340 (25 bp)
ACCGACTGTGTGTACTATCCAGCAG
LOC_Os08g09890
Os.54326.1.S1_at--510--971Chr08:5700272..5700296 (25 bp)
AGGAGCTGTCTCAGGATCAGATGTT
LOC_Os08g09890
Os.54326.1.S1_at--924--5831Chr08:5700237..5700261 (25 bp)
GACCTCTTTGGCATTTGTCTACCGC
LOC_Os08g09890
Os.54326.1.S1_at--1124--3971Chr08:5700200..5700224 (25 bp)
CGGTGGTCATCTCGCCATTGAAGGC
LOC_Os08g09890
Os.54326.1.S1_at--1057--5851Chr08:5700170..5700194 (25 bp)
GAGCCACAGTCTCGCTGTTTTTTGG
LOC_Os08g09890
Target Sequence 
TTCCCGATGAGGTCGTTCCGGTAGATGAGATGGCCGCATCTCCGCCTGCTCCATCTACTGCGGTGTTCGCAGCGGCTGTG
GAGGAGGCTTCAGCTCCGCCGCCGACGCTTATCACCTTCTCCAGGAGAGCCAAGAAAGCAATCCCCCCGGCACTGCTTCC
CCCACCAGCCCCTCAGCAGCCGCCGCAACCAGCGCCGCTGCAGACGCCGCGTCGCAGTGTGCGTCAAGCGCTTCAAGCGA
CACATGGCGCCCCAACTTTCTCCCGCTGCCAGTCAGTGTTAGCTAAGAAGATGGGGGAGAAGGATACTGCTGTCCCAGCT
GCGCCTGCACCGACTGTGTGTACTATCCAGCAGTACAACGAGCTGTTCGAGAAGGAGCTGTCTCAGGATCAGATGTTGGC
GCTGGCCGACCTCTTTGGCATTTGTCTACCGCCTCCTGCCAGCGCGGTGGTCATCTCGCCATTGAAGGCGGCCTGAGCCA
CAGTCTCGCTGTTTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis