Browse Element(s) Details


Os.54577.1.S1_at

Description gb:AK105875.1
DB_XREF= gi:32991084
TID=Os.54577.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B08, full insert sequence.
FL= gb:AK105875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0605011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54577.1.S1_at--753--9571Chr01:2890252..2890276 (25 bp)
TCTTGCAAAGCAATTTGGTGTTCTT
LOC_Os01g06050
Os.54577.1.S1_at--305--6471Chr01:2890224..2890248 (25 bp)
GATAACAAGCTTTTAAGTGATCAAA
LOC_Os01g06050
Os.54577.1.S1_at--705--2751Chr01:2890197..2890221 (25 bp)
AAGAAACTCTATTTGCAGCATTACA
LOC_Os01g06050
Os.54577.1.S1_at--508--6511Chr01:2890066..2890090 (25 bp)
GATTTGAAGCAGTTGTCGCGTCAAA
LOC_Os01g06050
Os.54577.1.S1_at--890--1191Chr01:2890056..2890080 (25 bp)
AGTTGTCGCGTCAAAAGTTGCCCTA
LOC_Os01g06050
Os.54577.1.S1_at--999--9311Chr01:2890051..2890075 (25 bp)
TCGCGTCAAAAGTTGCCCTACGTGA
LOC_Os01g06050
Os.54577.1.S1_at--552--3271Chr01:2890045..2890069 (25 bp)
CAAAAGTTGCCCTACGTGATGATGA
LOC_Os01g06050
Os.54577.1.S1_at--95--71Chr01:2889977..2890001 (25 bp)
ATTGCAAATGCGCACCTCTTCGTGT
LOC_Os01g06050
Os.54577.1.S1_at--868--1751Chr01:2889964..2889988 (25 bp)
ACCTCTTCGTGTTTCTGCCAATCTT
LOC_Os01g06050
Os.54577.1.S1_at--943--8771Chr01:2889955..2889979 (25 bp)
TGTTTCTGCCAATCTTCCTGGCTGT
LOC_Os01g06050
Os.54577.1.S1_at--418--4191Chr01:2889880..2889904 (25 bp)
CCCTCAGCTGTTGTGTCTTTTGTTT
LOC_Os01g06050
Target Sequence 
TCTTGCAAAGCAATTTGGTGTTCTTGATGATAACAAGCTTTTAAGTGATCAAATTAAGAAACTCTATTTGCAGCATTACA
AGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGC
GCTAAGAAGGCGGCCTCTATGGTGCCGATTTGAAGCAGTTGTCGCGTCAAAAGTTGCCCTACGTGATGATGATGTTAGGC
TGCTTAAGTAGAAGAATACTGTCCTTGTTCTCTGTATTGCAAATGCGCACCTCTTCGTGTTTCTGCCAATCTTCCTGGCT
GTGTTTCAGAGGTCGTCAGCTGAGCTCCATCCCAACCATCGCATACAAGGCCCCCTCAGCTGTTGTGTCTTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis