Browse Element(s) Details


Os.54600.1.S1_at

Description gb:AK106122.1
DB_XREF= gi:32991331
TID=Os.54600.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E12, full insert sequence.
FL= gb:AK106122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5597411/11deoxycytidylate deaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54600.1.S1_at--485--3611Chr01:32560941..32560965 (25 bp)
CTTCTAATCTCCTACAAACTTAAAG
LOC_Os01g55974
Os.54600.1.S1_at--952--3011Chr01:32560936..32560960 (25 bp)
AATCTCCTACAAACTTAAAGCATCT
LOC_Os01g55974
Os.54600.1.S1_at--611--10491Chr01:32560922..32560946 (25 bp)
TTAAAGCATCTCATTAATTTGCCTT
LOC_Os01g55974
Os.54600.1.S1_at--860--2711Chr01:32560919..32560943 (25 bp)
AAGCATCTCATTAATTTGCCTTTAT
LOC_Os01g55974
Os.54600.1.S1_at--812--451Chr01:32560915..32560939 (25 bp)
ATCTCATTAATTTGCCTTTATAAGC
LOC_Os01g55974
Os.54600.1.S1_at--381--3591Chr01:32560911..32560935 (25 bp)
CATTAATTTGCCTTTATAAGCTAAG
LOC_Os01g55974
Os.54600.1.S1_at--786--3111Chr01:32560907..32560931 (25 bp)
AATTTGCCTTTATAAGCTAAGAATA
LOC_Os01g55974
Os.54600.1.S1_at--1063--5231Chr01:32560887..32560911 (25 bp)
GAATAATCTTGTGTTATCTTCTCTT
LOC_Os01g55974
Os.54600.1.S1_at--1022--9751Chr01:32560884..32560908 (25 bp)
TAATCTTGTGTTATCTTCTCTTTGC
LOC_Os01g55974
Os.54600.1.S1_at--310--3071Chr01:32560883..32560907 (25 bp)
AATCTTGTGTTATCTTCTCTTTGCA
LOC_Os01g55974
Os.54600.1.S1_at--609--3651Chr01:32560870..32560894 (25 bp)
CTTCTCTTTGCAGAAATTATATGTT
LOC_Os01g55974
Target Sequence 
CTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTT
GCAGAAATTATATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis