Browse Element(s) Details


Os.54935.2.S1_at

Description gb:AK107135.1
DB_XREF= gi:32992344
TID=Os.54935.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C09, full insert sequence.
FL= gb:AK107135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4502011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44990NANA4+26396871..26397275hypothetical protein
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54935.2.S1_at--219--9331Chr04:26421042..26421066 (25 bp)
TCGCCGACTGGTTCGACATGGACTA
LOC_Os04g45020
Os.54935.2.S1_at--970--831Chr04:26421059..26421083 (25 bp)
ATGGACTACGGGACTAGCCTCGCCG
LOC_Os04g45020
Os.54935.2.S1_at--803--8291Chr04:26421182..26421206 (25 bp)
GGCTTCTGCTGGGACTTCGACGACG
LOC_Os04g45020
Os.54935.2.S1_at--941--6691Chr04:26421262..26421286 (25 bp)
GTTCCTCGGCATCAACTAGGCGGGA
LOC_Os04g45020
Os.54935.2.S1_at--243--9651Chr04:26421361..26421385 (25 bp)
TCAGAGGTGTAAATCGTGCCGTGCA
LOC_Os04g45020
Os.54935.2.S1_at--109--4011Chr04:26421375..26421399 (25 bp)
CGTGCCGTGCATGTGTAGTAGTTAA
LOC_Os04g45020
Os.54935.2.S1_at--468--1691Chr04:26421435..26421459 (25 bp)
AGCCATGAGTTGTGCGTCGAAGTAC
LOC_Os04g45020
Os.54935.2.S1_at--922--1171Chr04:26421455..26421479 (25 bp)
AGTACAGTCTTAGCTTTCTCTTCAT
LOC_Os04g45020
Os.54935.2.S1_at--370--10611Chr04:26421484..26421508 (25 bp)
TTCGTGACTTCGTGTATACAGCTCT
LOC_Os04g45020
Os.54935.2.S1_at--22--10191Chr04:26421498..26421522 (25 bp)
TATACAGCTCTGGTTTTCCGGAAAA
LOC_Os04g45020
Os.54935.2.S1_at--108--7091Chr04:26421552..26421576 (25 bp)
GTCACAATTGCACGGTTTTCAGGCT
LOC_Os04g45020
Target Sequence 
TCGCCGACTGGTTCGACATGGACTACGGGACTAGCCTCGCCGGGACGGCGCCGGGCCTGAGCTACCAGGGCTCGTCGTCG
GTGCAGGTCGACGTCCCGTGCGGCGGCGCCGTGGACTCCCTGCACGGGCTGGGCGACGGCGGCTTCTGCTGGGACTTCGA
CGACGCGGCCGATCACATGCAGGGAGGAGGAGGGCTCTGCGACCTGCTCTCCATGAGCGAGTTCCTCGGCATCAACTAGG
CGGGAGCGTACGCTCTTTCTTCCGTACAGTTCGTCGCCGAAGTGTAAATTCGTCAGTTTCTTTTTTTTCCCCCTCTTTTT
CAGAGGTGTAAATCGTGCCGTGCATGTGTAGTAGTTAAACTTACTGGCTTGTAGTGTTGAGTTTGGACTTCGAAGCCATG
AGTTGTGCGTCGAAGTACAGTCTTAGCTTTCTCTTCATAAGGTTCGTGACTTCGTGTATACAGCTCTGGTTTTCCGGAAA
ACGGTTCAGAAAGAATAACAGAAACAGAGCGTCACAATTGCACGGTTTTCAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54935.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis