Browse Element(s) Details


Os.55107.1.S1_at

Description gb:AK107504.1
DB_XREF= gi:32992713
TID=Os.55107.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E04, full insert sequence.
FL= gb:AK107504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2591011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55107.1.S1_at--871--1691Chr05:14991862..14991886 (25 bp)
ACCACGACGGCGAGTTTCAAGACTT
LOC_Os05g25910
Os.55107.1.S1_at--599--6811Chr05:14991849..14991873 (25 bp)
GTTTCAAGACTTGCAGCTACGTCCT
LOC_Os05g25910
Os.55107.1.S1_at--1114--5051Chr05:14991837..14991861 (25 bp)
GCAGCTACGTCCTATACGCACGAGG
LOC_Os05g25910
Os.55107.1.S1_at--28--8551Chr05:14991553..14991577 (25 bp)
TGGAGCTGCTCGAGTGCTACCTGTC
LOC_Os05g25910
Os.55107.1.S1_at--679--9711Chr05:14991526..14991550 (25 bp)
TCAACGCGCGGGAGCACCACGGCGT
LOC_Os05g25910
Os.55107.1.S1_at--697--1711Chr05:14991511..14991535 (25 bp)
ACCACGGCGTGATCATGGAGGCGTT
LOC_Os05g25910
Os.55107.1.S1_at--740--7231Chr05:14991464..14991488 (25 bp)
GTCGCTGATGCTGATTGTTGCGTTG
LOC_Os05g25910
Os.55107.1.S1_at--489--6631Chr05:14991438..14991462 (25 bp)
GTTGTGAGCTATATTGATTCTGTTT
LOC_Os05g25910
Os.55107.1.S1_at--876--6591Chr05:14991402..14991426 (25 bp)
GATTGATCGAATCGATTGAGCTGTA
LOC_Os05g25910
Os.55107.1.S1_at--644--10231Chr05:14991369..14991393 (25 bp)
TATTGTGCCGTTAATTTTTGGTGTT
LOC_Os05g25910
Os.55107.1.S1_at--350--7751Chr05:14991350..14991374 (25 bp)
GGTGTTAATGAATCAAGCTGGCATA
LOC_Os05g25910
Target Sequence 
ACCACGACGGCGAGTTTCAAGACTTGCAGCTACGTCCTATACGCACGAGGCCACCGTCGGCGGCGGCGGCGTCGGCCGAG
CCGAGGAGGACGGCGAGCGGGAGCGGCACGTGCCCGAGCTCGCCGAGGATGAGGAGCAGGAGGCTGCACGTTCTCGGCGG
CTGCGAGTGTAGGGCTGGTAGTGGTCGCCGGAGGAGCGGCGGCGGTGGGTTCGCGGTGGTGAAGGCGTCGGCGGAGCCGG
CGAGGGACTTCCGGGAGAGCATGGTGGAGATGGTGGTCGGGAACGGGATGCGGTCGCCGGAGGATTTGCTGGAGCTGCTC
GAGTGCTACCTGTCGCTCAACGCGCGGGAGCACCACGGCGTGATCATGGAGGCGTTCAGGGGCGTCTGGGTCGAGATCGT
CGCTGATGCTGATTGTTGCGTTGGGTTGTGAGCTATATTGATTCTGTTTTTGTATAGTTGGATTGATCGAATCGATTGAG
CTGTAAATGGATATATTGTGCCGTTAATTTTTGGTGTTAATGAATCAAGCTGGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis