Browse Element(s) Details


Os.55146.1.S1_at

Description gb:AK107584.1
DB_XREF= gi:32992793
TID=Os.55146.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E07, full insert sequence.
FL= gb:AK107584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2694011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed
LOC_Os09g26950OsAffx.6411.1.S1_at11/119+16375962..16376279cytochrome P450 monooxygenase CYP92A1, putative
LOC_Os09g26960Os.46776.1.S1_s_at11/119+16386751..16389390Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55146.1.S1_at--851--831Chr09:16360615..16360639 (25 bp)
ATGGAGGAGGTCTTCGGCCTGTCCA
LOC_Os09g26940
Os.55146.1.S1_at--586--8691Chr09:16360596..16360620 (25 bp)
TGTCCACGCCGAGGAAGGTTCCGCT
LOC_Os09g26940
Os.55146.1.S1_at--1137--6131Chr09:16360570..16360594 (25 bp)
GAGGTCGTCGTTAAGCCCAAGCTGC
LOC_Os09g26940
Os.55146.1.S1_at--290--9971Chr09:16360532..16360556 (25 bp)
TACCGGGCCCTGATGTATCTATATG
LOC_Os09g26940
Os.55146.1.S1_at--272--9531Chr09:16360515..16360539 (25 bp)
TCTATATGTCAGTACGTGGGCCATT
LOC_Os09g26940
Os.55146.1.S1_at--373--311Chr09:16360489..16360513 (25 bp)
ATACCAATACTTCCCATGATCTCTA
LOC_Os09g26940
Os.55146.1.S1_at--963--6771Chr09:16360448..16360473 (25 bp)
GTTATGAATATTATCTCCTCGGGAG
LOC_Os09g26940
Os.55146.1.S1_at--80--3811Chr09:16360434..16360458 (25 bp)
CTCCTCGGGAGATAAGATTCTTTCT
LOC_Os09g26940
Os.55146.1.S1_at--168--10571Chr09:16360417..16360441 (25 bp)
TTCTTTCTTGTGAACCAATCCCAAC
LOC_Os09g26940
Os.55146.1.S1_at--575--7351Chr09:16360408..16360432 (25 bp)
GTGAACCAATCCCAACTAGAGTGAG
LOC_Os09g26940
Os.55146.1.S1_at--792--451Chr09:16360374..16360398 (25 bp)
ATCTCCTCCTAAAACCGCTGTATAT
LOC_Os09g26940
Target Sequence 
ATGGAGGAGGTCTTCGGCCTGTCCACGCCGAGGAAGGTTCCGCTCGAGGTCGTCGTTAAGCCCAAGCTGCCGGCCCACCT
CTATACCGGGCCCTGATGTATCTATATGTCAGTACGTGGGCCATTGATACCAATACTTCCCATGATCTCTACCATGGAAT
AAGTTTGTTATGAATATTATCTCCTCGGGAGATAAGATTCTTTCTTGTGAACCAATCCCAACTAGAGTGAGATAAGATTT
ATCTCCTCCTAAAACCGCTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis