Browse Element(s) Details


Os.55299.1.S1_at

Description gb:AK107826.1
DB_XREF= gi:32993035
TID=Os.55299.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G07, full insert sequence.
FL= gb:AK107826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4331010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55299.1.S1_at--477--3751Chr04:25400089..25400113 (25 bp)
CTCAGGCTCCGGCTAATAAAGCTCT
LOC_Os04g43310
Os.55299.1.S1_at--179--3011Chr04:25400075..25400099 (25 bp)
AATAAAGCTCTAGCCGAGCCGGGTA
LOC_Os04g43310
Os.55299.1.S1_at--1152--9971Chr04:25400065..25400089 (25 bp)
TAGCCGAGCCGGGTACTAATAAGCC
LOC_Os04g43310
Os.55299.1.S1_at--212--4531Chr04:25399789..25399813 (25 bp)
GCCGCTGGCTCCAGATAAAGGAGTG
LOC_Os04g43310
Os.55299.1.S1_at--98--9851Chr04:25399774..25399798 (25 bp)
TAAAGGAGTGACGTGCCGGCGACCA
LOC_Os04g43310
Os.55299.1.S1_at--931--3412Chr11:23865056..23865504 (25 bp)
CAGACATCACAACCCCAGGTGGTTT
NONE
Os.55299.1.S1_at--234--4111Chr04:25399703..25399727 (25 bp)
CGACACATCATCAAACCGGTTTCTT
LOC_Os04g43310
Os.55299.1.S1_at--301--2431Chr04:25399611..25399635 (25 bp)
AAAACGTTGGTGTACTAGCAGCTTT
LOC_Os04g43310
Os.55299.1.S1_at--717--7011Chr04:25399600..25399624 (25 bp)
GTACTAGCAGCTTTATTCGATGAAA
LOC_Os04g43310
Os.55299.1.S1_at--162--8931Chr04:25399552..25399576 (25 bp)
TGACCAGAATGGTCCAGCTTTCTAT
LOC_Os04g43310
Os.55299.1.S1_at--1154--5551Chr04:25399526..25399550 (25 bp)
GAAAGCGCGATTTCTTGTTAGTACT
NONE
Target Sequence 
CTCAGGCTCCGGCTAATAAAGCTCTAGCCGAGCCGGGTACTAATAAGCCGGCTCCGGGGCCGGTCCCCAACAACAAGCTC
CTAGCCGGTCACCTGGCGCACGAGTTCCTGACCCGCGGCACGCTCCAGGGCCGCCGGGTCGAGCCGACGAAGCCGAGCCA
AGCCGCCGCCTTGCATCCCGGCGAGCCCGTGCCCGAGCCGGAGCCCGACGCCGCCAAGCGGAGGAGGTACGCCGAGGTGT
CGTGGCTCCTCATGGCGAGCGGGGCCCGCGTCCCCGGCGTCGTCAACCCGACGCAGCTCGGCCGCTGGCTCCAGATAAAG
GAGTGACGTGCCGGCGACCAGACATCACAACCCCAGGTGGTTTTCCCCCTTTTCACCGGGGAGAACCGACACATCATCAA
ACCGGTTTCTTCGTTTTCTCCTCCTCTTTGCCTGCTCCTCCTGTTTAGATTTTAGATCTAGGAGAGAAAAAGAAAAAAAA
AACGTTGGTGTACTAGCAGCTTTATTCGATGAAATTATTGTTGTTATTCAAAACCAATGACCAGAATGGTCCAGCTTTCT
ATAGAAAGCGCGATTTCTTGTTAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis