Browse Element(s) Details


Os.55400.2.S1_at

Description gb:AK108011.1
DB_XREF= gi:32993220
TID=Os.55400.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H05, full insert sequence.
FL= gb:AK108011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4767011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55400.2.S1_at--268--10491Chr11:28223851..28223875 (25 bp)
TTCAAGGCGAGGTGCCCGGACACGA
LOC_Os11g47670
Os.55400.2.S1_at--632--7771Chr11:28223912..28223936 (25 bp)
GGTGCATCCAGCCAGCCGAGCTCAA
LOC_Os11g47670
Os.55400.2.S1_at--986--3811Chr11:28223967..28223991 (25 bp)
CTCCACTCACTGACTGATTCATTGA
LOC_Os11g47670
Os.55400.2.S1_at--17--8031Chr11:28224002..28224026 (25 bp)
GGAGGAGTAGTGATTAGTCGCAAAT
LOC_Os11g47670
Os.55400.2.S1_at--938--6931Chr11:28224045..28224069 (25 bp)
GTAGTAAGAGGCTTCATGCGCTGAT
LOC_Os11g47670
Os.55400.2.S1_at--814--8291Chr11:28224054..28224078 (25 bp)
GGCTTCATGCGCTGATGGTGATTGC
LOC_Os11g47670
Os.55400.2.S1_at--1112--6571Chr11:28224073..28224097 (25 bp)
GATTGCATTAAGAAGGCGCGCGTCT
LOC_Os11g47670
Os.55400.2.S1_at--1030--2731Chr11:28224082..28224106 (25 bp)
AAGAAGGCGCGCGTCTGTTCGTCGC
LOC_Os11g47670
Os.55400.2.S1_at--536--4491Chr11:28224105..28224129 (25 bp)
GCCGGTAGCTACACTTGTTACTGTT
LOC_Os11g47670
Os.55400.2.S1_at--235--2291Chr11:28224132..28224156 (25 bp)
AAATGCATGCTGTACGTGTGATTCA
LOC_Os11g47670
Os.55400.2.S1_at--271--8591Chr11:28224166..28224190 (25 bp)
TGGTTTAACTCCGAATCTGCCAGTT
LOC_Os11g47670
Target Sequence 
TTCAAGGCGAGGTGCCCGGACACGAGGACGACGCCGACGGACGTGGAGGTGACGCCGCAGCGGTGCATCCAGCCAGCCGA
GCTCAAGGTCGTCTTCTGCCCGCCGGACAACACCTCCTCCACTCACTGACTGATTCATTGATGGTTAGCAAGGAGGAGTA
GTGATTAGTCGCAAATAATAATCCTAATTAGCACGTAGTAAGAGGCTTCATGCGCTGATGGTGATTGCATTAAGAAGGCG
CGCGTCTGTTCGTCGCCGGTAGCTACACTTGTTACTGTTAGAAATGCATGCTGTACGTGTGATTCATTCAATAAATGGTT
TAACTCCGAATCTGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55400.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis