Browse Element(s) Details


Os.55595.1.S1_at

Description gb:AK108385.1
DB_XREF= gi:32993594
TID=Os.55595.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E11, full insert sequence.
FL= gb:AK108385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0210011/11Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g020605/11Cationic peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed
LOC_Os11g02140NANA11+589587..589874hypothetical protein
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55595.1.S1_at--283--2932Chr12:614197..614221 (25 bp)
AAGGACTAAGCGCAACTGACATGAT
LOC_Os12g02060
Os.55595.1.S1_at--179--10112Chr12:614472..614496 (25 bp)
TAGGCCAGGCAAGGTGCGTCAATTT
LOC_Os12g02060
Os.55595.1.S1_at--1160--10292Chr12:614495..614519 (25 bp)
TTTCGCAACCGCATCTACAGTGAGA
LOC_Os12g02060
Os.55595.1.S1_at--943--3251Chr11:571584..571608 (25 bp)
CAAATTGTCCAAACACGACCGGCGA
LOC_Os11g02100
Os.55595.1.S1_at--1050--5631Chr11:571636..571660 (25 bp)
GACACCCTACACCTTTGACAATTTT
LOC_Os11g02100
Os.55595.1.S1_at--749--1452Chr12:614655..614679 (25 bp)
AGAAGGGTGTCCTGCATTCTGACCA
LOC_Os12g02060
Os.55595.1.S1_at--722--7732Chr12:614693..614717 (25 bp)
GGTGGTTCAGCAGATTCCCAGACGA
LOC_Os12g02060
Os.55595.1.S1_at--655--9691Chr11:571776..571800 (25 bp)
TCACTGATTTCAGCGCAGCAATAGT
LOC_Os11g02100
Os.55595.1.S1_at--728--1152Chr12:614861..614884 (24 bp)
AGTCTAAGCCTGTGTGTGCCTGTGT
NONE
Os.55595.1.S1_at--161--8072Chr12:614910..614934 (25 bp)
GGAGAAGTGTCCCTTTCCTGATGCT
NONE
Os.55595.1.S1_at--845--4272Chr12:614926..615069 (25 bp)
CCTGATGCTGTAGTCGTCTTGAAAG
NONE
Target Sequence 
AAGGACTAAGCGCAACTGACATGATTGCACTCTCAGGGGCTCACACCATAGGCCAGGCAAGGTGCGTCAATTTTCGCAAC
CGCATCTACAGTGAGACCAACATCGACACTTCCCTGGCAACATCTCTGAAATCAAATTGTCCAAACACGACCGGCGACAA
CAACATATCCCCCCTTGATGCATCGACACCCTACACCTTTGACAATTTTTACTACAAGAACCTGCTGAACAAGAAGGGTG
TCCTGCATTCTGACCAGCAACTATTCAATGGTGGTTCAGCAGATTCCCAGACGACCACCTACTCTCAAACATGGCAACAT
TTTTCACTGATTTCAGCGCAGCAATAGTGAAGATGGGCAACATCGACCCCCTTACTGGATCCAGTGGACAGATCAGGAAG
AACTGCAGGAAGGTAAACTAGGTCATAATTTTTACAGTCTAAGCCTGTGTGTGCCTGTGTGGAAGAGTATAATCTTCAGA
GAAGGGAGAAGTGTCCCTTTCCTGATGCTGTAGTCGTCTTGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis