Browse Element(s) Details


Os.55787.1.S1_at

Description gb:AK108799.1
DB_XREF= gi:32994008
TID=Os.55787.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C06, full insert sequence.
FL= gb:AK108799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2800011/11Glutathione reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006749biological_processglutathione metabolism
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004362molecular_functionglutathione-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55787.1.S1_at--777--5311Chr10:14177511..14177535 (25 bp)
GAAGGTTATCGTGTGTGCTAATACT
LOC_Os10g28000
Os.55787.1.S1_at--25--3291Chr10:14177484..14177508 (25 bp)
CAAAGTTCTAGGAGTGCACGTGTGT
LOC_Os10g28000
Os.55787.1.S1_at--439--10271Chr10:14177307..14177331 (25 bp)
TTTGATGCCACCATAGGTGTCCACC
LOC_Os10g28000
Os.55787.1.S1_at--945--1451Chr10:14177034..14177058 (25 bp)
AGAAGTAGATACACCTGCCCTGCAT
LOC_Os10g28000
Os.55787.1.S1_at--203--1771Chr10:14177027..14177046 (20 bp)
ACCTGCCCTGCATAAATGAGTCTGA
LOC_Os10g28000
Os.55787.1.S1_at--43--5851Chr10:14176587..14176611 (25 bp)
GACCAGTCGATTTCTAACCGCGGAA
LOC_Os10g28000
Os.55787.1.S1_at--701--6971Chr10:14176533..14176557 (25 bp)
GTACCAGAGAAATCCAACCCACGAT
LOC_Os10g28000
Os.55787.1.S1_at--260--2611Chr10:14176518..14176542 (25 bp)
AACCCACGATTGCAGCCAGTGAAGA
LOC_Os10g28000
Os.55787.1.S1_at--61--2971Chr10:14176474..14176498 (25 bp)
AATGGCTAGCTATCTCGTATATTGC
LOC_Os10g28000
Os.55787.1.S1_at--734--1411Chr10:14176376..14176400 (25 bp)
AGAAATGCTTCAGGTCCCGGTCAAA
LOC_Os10g28000
Os.55787.1.S1_at--1051--3471Chr10:14176333..14176357 (25 bp)
CAGGATGTTGATAGTATTGCCGCAT
LOC_Os10g28000
Target Sequence 
GAAGGTTATCGTGTGTGCTAATACTAACAAAGTTCTAGGAGTGCACGTGTGTGGTGAAGATGCACCCGAGATTATTCAGG
GTATTGCAATTGCTGTAAAGGCTGGGTTGATGAAGCAAAACTTTGATGCCACCATAGGTGTCCACCCAACCACTGCAGAA
GAACTTGTCACAATGAGAAGCCCGACTAGGAAGGTCCGGAGAGATGCTGTGGATGAGGCCAAAATGAAAGATGAGGCCAC
AAGTCAGAAGTAGATACACCTGCCCTGCATAAATGAGTCTGACCAGTCGATTTCTAACCGCGGAAACAACAGACAGATAT
CGGTATTTCGAGCAGTACCAGAGAAATCCAACCCACGATTGCAGCCAGTGAAGAACGGAGATGAGTTACAGCAAATGGCT
AGCTATCTCGTATATTGCATGGTTTATAAGTTCATTATTATAGAAACCAGCTCAAGTTCCTTTTATTTTTTTGGCCTAAC
ATGTTACTGAAAGAAATGCTTCAGGTCCCGGTCAAAAAAAAGAAAGAAATGCTTCAGGATGTTGATAGTATTGCCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis