Browse Element(s) Details

Os.55908.1.S1_at

Description

gb:AK108978.1
DB_XREF= gi:32994187
TID=Os.55908.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-E10, full insert sequence.
FL= gb:AK108978.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04200	1/11	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04169	OsAffx.15255.1.S1_x_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	OsAffx.15254.1.S1_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	Os.20157.1.A1_at	10/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190	Os.51161.2.S1_x_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.2.S1_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.1.S1_at	9/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210	OsAffx.23005.1.S1_at	7/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04210	OsAffx.23005.1.S1_x_at	5/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04220	Os.606.1.S1_at	11/11	6	+	1779475..1780051	expressed protein
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein
LOC_Os06g04250	Os.49653.1.S1_at	11/11	6	+	1788837..1790295	phosphate-responsive 1 family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0010021	biological_process	amylopectin biosynthesis
GO:0019252	biological_process	starch biosynthesis
GO:0009507	cellular_component	chloroplast
GO:0009011	molecular_function	starch synthase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55908.1.S1_at--787--165	1	Chr06:1768848..1769149 (25 bp)	AGCGCGCCATCAAGGACAAGACGAA	LOC_Os06g04200
Os.55908.1.S1_at--38--871	1	NONE	TGTCCATCCGCAACGACAAGTCTCT	NONE
Os.55908.1.S1_at--1051--559	1	NONE	GACAAGTCTCTTGGCCGCTTTTTCG	NONE
Os.55908.1.S1_at--295--53	1	NONE	ATCGCTGCTGCCCAGTTTCCATGTC	NONE
Os.55908.1.S1_at--822--407	1	NONE	CGAGAGCAGCGCGTTCTTTGCCAAC	NONE
Os.55908.1.S1_at--550--673	1	NONE	GTTCTTTGCCAACCCGTCGCAGGCT	NONE
Os.55908.1.S1_at--502--833	1	NONE	GGCTGCGTTCGAGATCAGCCAAGAC	NONE
Os.55908.1.S1_at--696--321	1	NONE	CAAGACATCGACGAACTCAAAGACA	NONE
Os.55908.1.S1_at--457--951	1	NONE	TCTCGACGTCGTAGCACTGTGGAAC	NONE
Os.55908.1.S1_at--735--509	1	NONE	GCACTGTGGAACACTTGGCCAGAGA	NONE
Os.55908.1.S1_at--794--551	1	NONE	GAAAAAACGCGAACATGGCGGCTTT	NONE

Target Sequence

AGCGCGCCATCAAGGACAAGACGAAAATGCTCGTAGGGGCAGAGGCCATGGTGTACCTCGCCGCCGTGATGGAGTACTGC
GTCGGGCTCGTCCTGCGTCCGGCGTGTGAGTGCGCGCGCGCGCAGTCCATGCTGCGCATCACGCCGCGCCACGTGCAGCT
GTCCATCCGCAACGACAAGTCTCTTGGCCGCTTTTTCGCCGACGCCGTCGCGCCGCCCACCCTGCCAACGGGCCTCGCGG
GCGCCGGTGCATTGCCCGGCTTGCCATCGCTGCTGCCCAGTTTCCATGTCCCGCCCGCCGCGGCAGCGGTGCCCACCGAA
GCCCAGGCGCCCGTCGCGGAGGCGGTGCCGGGCCTGCGCAGGGCGCTGGCAGCTGCGGGCATGGAGCGGTGCGACGAGAG
CAGCGCGTTCTTTGCCAACCCGTCGCAGGCTGCGCTGCCGGCGCTGGCCGCCGCCGTGGCTGCGTTCGAGATCAGCCAAG
ACATCGACGAACTCAAAGACACCCTCACCCACACCCTCCGCCACTTCTCGACGTCGTAGCACTGTGGAACACTTGGCCAG
AGAGGTGAAAAAACGCGAACATGGCGGCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis