Browse Element(s) Details


Os.56032.1.S1_x_at

Description gb:AK109151.1
DB_XREF= gi:32994360
TID=Os.56032.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F10, full insert sequence.
FL= gb:AK109151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5434010/1126S protease regulatory subunit 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54290NANA2+33289993..33290331BRUSHY protein 1, putative
LOC_Os02g54300OsAffx.3064.1.S1_at11/112+33293866..33294282hypothetical protein
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56032.1.S1_x_at--875--1351Chr02:33311989..33312170 (25 bp)
AGAGCAACCGCTGCAAGTGGCTAGG
LOC_Os02g54340
Os.56032.1.S1_x_at--461--7731Chr02:33311966..33311990 (25 bp)
GGTGTACCAAGATTATAAGTCCTAA
LOC_Os02g54340
Os.56032.1.S1_x_at--143--1151Chr02:33311949..33311973 (25 bp)
AGTCCTAATACTGATGATGCTAAAT
LOC_Os02g54340
Os.56032.1.S1_x_at--710--51Chr02:33311811..33311928 (25 bp)
ATTGCAAAGTTTGTGGTTGGCCTAG
LOC_Os02g54340
Os.56032.1.S1_x_at--525--2331Chr02:33311781..33311805 (25 bp)
AAAGTTTCTCCAACTGACATTGAGG
LOC_Os02g54340
Os.56032.1.S1_x_at--96--1731Chr02:33311148..33311172 (25 bp)
ACCAGATTCAAATTCCTTTGCCACC
LOC_Os02g54340
Os.56032.1.S1_x_at--720--10271Chr02:33311132..33311156 (25 bp)
TTTGCCACCCAAAATTGACCCAAGT
LOC_Os02g54340
Os.56032.1.S1_x_at--177--10751Chr02:33311118..33311142 (25 bp)
TTGACCCAAGTGTTACCATGATGAC
LOC_Os02g54340
Os.56032.1.S1_x_at--875--591NONE
ATGCGGGAGGTTGTCCCCGCATCCA
NONE
Os.56032.1.S1_x_at--590--1371Chr02:33312789..33313164 (25 bp)
AGACCTACGGGCTTGGGCCATACTC
LOC_Os02g54340
Os.56032.1.S1_x_at--986--7551Chr02:33312775..33312799 (25 bp)
GGGCCATACTCCACAAGCATTAAGA
LOC_Os02g54340
Target Sequence 
AGAGCAACCGCTGCAAGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATGTGATTAATGTAA
AACAAATTGCAAAGTTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGTGTT
GATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGACCCAAGTGTTACCATGATGACAGTTGAGGAAAA
ACCTGATGTGACATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGGTTGTCCCCGCATCCACGC
GAGCTTCTCTCTTCTCTCGCATTCGCACCCCCACCTTCTCTCCACGACTCCACCTGAAGCGCCTCTCGCCGCCGCCGGAG
AAGACGCGCAGCGGCAGCAGCGGCGGAAGCGGCGGGGAGCCATGGCGCCGGAGCCGGAAGACGACATCATGAACGAGAAG
AACCCCCGCCCGCTCGACGAGGACGACATCGCTCTCCTCAAGACCTACGGGCTTGGGCCATACTCCACAAGCATTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56032.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis