Browse Element(s) Details


Os.5693.1.S1_at

Description gb:AK108344.1
DB_XREF= gi:32993553
TID=Os.5693.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.9 (P0423B08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B04, full insert sequence.
FL= gb:AK108344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6430011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5693.1.S1_at--623--7351Chr01:37651255..37651279 (25 bp)
GTGAATGTGCCGGTAGCGCAGTTTA
LOC_Os01g64300
Os.5693.1.S1_at--980--3971Chr01:37651375..37651399 (25 bp)
CGGGCGCGGGATTCACCGATGACCA
LOC_Os01g64300
Os.5693.1.S1_at--679--1071Chr01:37651441..37651465 (25 bp)
AGGGACCTCCGCCAGGTACGCAATG
LOC_Os01g64300
Os.5693.1.S1_at--115--9951Chr01:37651457..37651481 (25 bp)
TACGCAATGCCGTGTGGCGGAAGAC
LOC_Os01g64300
Os.5693.1.S1_at--1124--2111Chr01:37651480..37651504 (25 bp)
ACAGGATTCCTCGATTGATCCGTGC
LOC_Os01g64300
Os.5693.1.S1_at--871--51Chr01:37651493..37651517 (25 bp)
ATTGATCCGTGCCTTCTGCATTCAG
LOC_Os01g64300
Os.5693.1.S1_at--141--4451Chr01:37651503..37651527 (25 bp)
GCCTTCTGCATTCAGCTGTAGCTTA
LOC_Os01g64300
Os.5693.1.S1_at--718--5111Chr01:37651552..37651576 (25 bp)
GCACTATGCATGTTTGAATTTGTCT
LOC_Os01g64300
Os.5693.1.S1_at--435--5091Chr01:37651613..37651637 (25 bp)
GCACCTGTAAAATATGTCTGTCATA
LOC_Os01g64300
Os.5693.1.S1_at--1052--8731Chr01:37651656..37651680 (25 bp)
TGTAAACCCTTGATTGGAGCTGTCA
LOC_Os01g64300
Os.5693.1.S1_at--115--8091Chr01:37651671..37651695 (25 bp)
GGAGCTGTCAATTGTTCAGCATTGA
LOC_Os01g64300
Target Sequence 
GTGAATGTGCCGGTAGCGCAGTTTAGGCGGTTATCGGTGGAGGCACTGATGGATAAAGCTGAGGATGACGACGACGACGA
CGAGGAGATGCTGCCGCCGCACGAGATGGTGGCGCGAGCGCGGGCGCGGGATTCACCGATGACCACCTTCTCGGTGCTGG
AGGGCGCCGGCCGCACGCTCAAGGGGAGGGACCTCCGCCAGGTACGCAATGCCGTGTGGCGGAAGACAGGATTCCTCGAT
TGATCCGTGCCTTCTGCATTCAGCTGTAGCTTAAGTTAGATTTGAGTGATTGGTTATGCACTATGCATGTTTGAATTTGT
CTGTGTACAACATGGATGATCGGGTGTTAANTTTTGGTTGCACCTGTAAAATATGTCTGTCATATTATCAATCATTATTA
CTTGTAAACCCTTGATTGGAGCTGTCAATTGTTCAGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis