Browse Element(s) Details


Os.57178.1.S1_at

Description gb:AK111086.1
DB_XREF= gi:32996295
TID=Os.57178.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F09, full insert sequence.
FL= gb:AK111086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3503010/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein
LOC_Os06g35020OsAffx.5016.1.S1_at9/116+20364074..20369998hypothetical protein
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57178.1.S1_at--410--4631NONE
GCGATCGACTTCTACTTGCAACACC
NONE
Os.57178.1.S1_at--970--9411Chr06:20373448..20373472 (25 bp)
TCGGGTAATCGATCGCCTAATCGCG
LOC_Os06g35030
Os.57178.1.S1_at--130--4291Chr06:20373463..20373487 (25 bp)
CCTAATCGCGCTGCTGGGTTCGGTG
LOC_Os06g35030
Os.57178.1.S1_at--1086--7891Chr06:20373479..20373503 (25 bp)
GGTTCGGTGCGATTAGTTTCGCTGT
LOC_Os06g35030
Os.57178.1.S1_at--616--6871Chr06:20373509..20373533 (25 bp)
GTTTGGCGTAGATTCATTGTGGCAT
LOC_Os06g35030
Os.57178.1.S1_at--947--31Chr06:20373524..20373548 (25 bp)
ATTGTGGCATGATCGATCTCTATCG
LOC_Os06g35030
Os.57178.1.S1_at--959--7811Chr06:20373577..20373601 (25 bp)
GGTTTAGGGTGATGTTGTTGTCTTC
LOC_Os06g35030
Os.57178.1.S1_at--392--6651Chr06:20373590..20373614 (25 bp)
GTTGTTGTCTTCATTGCCGGAGTTT
LOC_Os06g35030
Os.57178.1.S1_at--998--71Chr06:20373602..20373626 (25 bp)
ATTGCCGGAGTTTTGGTCTCTGACG
LOC_Os06g35030
Os.57178.1.S1_at--308--7171Chr06:20373617..20373641 (25 bp)
GTCTCTGACGCGATCATTCCAGAAT
LOC_Os06g35030
Os.57178.1.S1_at--310--91Chr06:20373632..20373656 (25 bp)
ATTCCAGAATGTTGATTCATGGGCG
LOC_Os06g35030
Target Sequence 
GCGATCGACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGG
GGGCGCGGGATTGGACTCCAGCAGCGACGGGTCCACCAACGGCCAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGC
TGCTGGGTTCGGTGCGATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGTGGCATGATCGATCTCTATCGATCGA
TCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTCATTGCCGGAGTTTTGGTCTCTGACGCGATCAT
TCCAGAATGTTGATTCATGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis