Browse Element(s) Details


Os.57467.1.A1_x_at

Description gb:D42590
DB_XREF= gi:3107887
DB_XREF=D42590
CLONE=T116
TID=Os.57467.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57467 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for heat shock protein 17.6 (T116 gene), partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g159505/11Enolase, C-terminal TIM barrel domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004634molecular_functionphosphopyruvate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57467.1.A1_x_at--512--3954Chr03:8817354..8817375 (22 bp)
CGGCACGTCCGCCTTGAACACGGTG
NONE
Os.57467.1.A1_x_at--975--8234Chr03:8817355..8817375 (21 bp)
GGCACGTCCGCCTTGAACACGGTGC
NONE
Os.57467.1.A1_x_at--291--9291NONE
TCCGCCTTGAACACGGTGCCTCGGG
NONE
Os.57467.1.A1_x_at--1063--4271NONE
CCTTGAACACGGTGCCTCGGGCGTC
NONE
Os.57467.1.A1_x_at--872--3591NONE
CTTGAACACGGTGCCTCGGGCGTCT
NONE
Os.57467.1.A1_x_at--501--5491NONE
GAACACGGTGCCTCGGGCGTCTCCT
NONE
Os.57467.1.A1_x_at--475--7793Chr03:8813261..8813282 (22 bp)
GGTGCCTCGGGCGTCTCCTTCCAGT
NONE
Os.57467.1.A1_x_at--418--4511NONE
GCCGAAGGCGCCGCGTCGGAGTTGG
NONE
Os.57467.1.A1_x_at--600--2771Chr03:8813330..8813355 (25 bp)
AAGAGCTGCCGCTGCCGGAGCCGAA
NONE
Os.57467.1.A1_x_at--260--7233Chr03:8813398..8813422 (25 bp)
GTCGAACACGTTGCTGCGGCGGATC
NONE
Os.57467.1.A1_x_at--505--4113Chr03:8813400..8813424 (25 bp)
CGAACACGTTGCTGCGGCGGATCAT
NONE
Target Sequence 
CGGCACGTCCGCCTTGAACACGGTGCCTCGGGCGTCTCCTTCCAGTCNGGANTCCGCCGAAGGCGCCGCGTCGGAGTTGG
NNCGAGGGAAGAGCTGCCGCTGCCGGAGCCGAAGGGGAAGCCGTCGAAGGGGTCCCAGAGGNNGAGGGAGAAGGGGTCGA
ACACGTTGCTGCGGCGGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57467.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis