Browse Element(s) Details

Os.5906.1.S1_at

Description

gb:AK066411.1
DB_XREF= gi:32976429
TID=Os.5906.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066L01, full insert sequence.
FL= gb:AK066411.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g31100	11/11	GAMYB-binding protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g31030	NA	NA	6	+	18054079..18056280	retrotransposon protein, putative, unclassified
LOC_Os06g31040	NA	NA	6	+	18057942..18059264	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31050	OsAffx.20689.1.S1_x_at	4/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.20673.1.S1_x_at	2/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.20695.1.S1_x_at	2/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.30496.1.S1_x_at	1/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31060	Os.5517.1.S1_at	11/11	6	+	18064905..18065748	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31070	Os.5918.1.S1_at	8/11	6	+	18071226..18071904	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31080	Os.37083.2.S1_at	1/11	6	+	18076804..18077130	retrotransposon protein, putative, unclassified
LOC_Os06g31080	Os.47130.4.A1_x_at	1/11	6	+	18076804..18077130	retrotransposon protein, putative, unclassified
LOC_Os06g31090	Os.28593.1.S1_at	9/11	6	+	18078028..18078822	GAMYB-binding protein, putative, expressed
LOC_Os06g31100	Os.5906.1.S1_at	11/11	6	+	18080031..18085701	GAMYB-binding protein, putative, expressed
LOC_Os06g31110	OsAffx.27896.1.S1_at	11/11	6	+	18086573..18087485	hypothetical protein
LOC_Os06g31120	NA	NA	6	+	18088463..18090303	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31130	NA	NA	6	+	18090555..18091151	retrotransposon protein, putative, unclassified
LOC_Os06g31140	NA	NA	6	+	18091723..18092838	transposon protein, putative, unclassified
LOC_Os06g31150	OsAffx.20736.1.S1_at	2/11	6	+	18094096..18096795	Transposable element protein, putative, Transposase_28
LOC_Os06g31150	OsAffx.7527.1.S1_x_at	1/11	6	+	18094096..18096795	Transposable element protein, putative, Transposase_28
LOC_Os06g31160	OsAffx.22947.5.S1_at	4/11	6	+	18101446..18105488	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31160	OsAffx.22947.5.S1_x_at	3/11	6	+	18101446..18105488	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31170	OsAffx.32036.1.S1_at	2/11	6	+	18106111..18110379	transposon protein, putative, unclassified
LOC_Os06g31170	OsAffx.22896.1.S1_x_at	1/11	6	+	18106111..18110379	transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5906.1.S1_at--1042--285	1	Chr06:18080523..18080547 (25 bp)	AAGTGCATTCCATTGCTTTGGTCTG	LOC_Os06g31100
Os.5906.1.S1_at--15--489	1	Chr06:18080509..18080533 (25 bp)	GCTTTGGTCTGTTCCTAGGGATGCA	LOC_Os06g31100
Os.5906.1.S1_at--750--195	1	Chr06:18080462..18080486 (25 bp)	ACTGTAGATTACGAGTTTGCCGCAA	LOC_Os06g31100
Os.5906.1.S1_at--127--223	1	Chr06:18080435..18080459 (25 bp)	ACAAGGCCATCAGGCGAGTTTGTCA	LOC_Os06g31100
Os.5906.1.S1_at--163--485	1	Chr06:18080398..18080422 (25 bp)	GCTACTATACCTTCACCGGTGGAAA	LOC_Os06g31100
Os.5906.1.S1_at--980--791	1	Chr06:18080370..18080394 (25 bp)	GGTTGGATACCGGAATCTATTTGCA	LOC_Os06g31100
Os.5906.1.S1_at--932--1073	1	Chr06:18080350..18080374 (25 bp)	TTGCAATTCCATGGTCATCGTTCAT	LOC_Os06g31100
Os.5906.1.S1_at--664--769	1	Chr06:18080296..18080320 (25 bp)	GGGTACTACACTTGAGAGCTGAATT	LOC_Os06g31100
Os.5906.1.S1_at--592--323	1	Chr06:18080261..18080285 (25 bp)	CAACCCTAGATAGTGGACGGCGTTT	LOC_Os06g31100
Os.5906.1.S1_at--947--673	1	Chr06:18080220..18080244 (25 bp)	GTTCTTGCTGTGTCCAAATTAGTGT	LOC_Os06g31100
Os.5906.1.S1_at--574--813	1	Chr06:18080176..18080200 (25 bp)	GGACTTACTGTTGTTTTCTACTTGA	LOC_Os06g31100

Target Sequence

AAGTGCATTCCATTGCTTTGGTCTGTTCCTAGGGATGCAAGAGAAAGGCTCGACNAGTGTTACTGTAGATTACGAGTTTG
CCGCAAGAACAAGGCCATCAGGCGAGTTTGTCAGCAAGTACAAGGGCTACTATACCTTCACCGGTGGAAAGGCGGTTGGA
TACCGGAATCTATTTGCAATTCCATGGTCATCGTTCATGGCTGATGACAGCCTCTTNTTCATCGAGGGGGTACTACACTT
GAGAGCTGAATTAACCATAAAACAACCCTAGATAGTGGACGGCGTTTAACTAACAGCGTCTNTGTTCTTGCTGTGTCCAA
ATTAGTGTGAAAAATGTTGTGTGATTCGGACTTACTGTTGTTTTCTACTTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis