Browse Element(s) Details


Os.5911.1.S1_at

Description gb:AK099459.1
DB_XREF= gi:32984668
TID=Os.5911.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023C24, full insert sequence.
FL= gb:AK099459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3451011/11Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34490OsAffx.24571.1.S1_at11/112+20657590..20662944Leucine Rich Repeat family protein, expressed
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein
LOC_Os02g34510Os.5911.1.S1_at11/112+20679728..20681922Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0000220cellular_componenthydrogen-transporting ATPase V0 domain
GO:0016887molecular_functionATPase activity
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5911.1.S1_at--368--8191Chr02:20680096..20680120 (25 bp)
GGAAGCGCTTGCACTCTATGGTCTC
LOC_Os02g34510
Os.5911.1.S1_at--751--7811Chr02:20680077..20680101 (25 bp)
GGTCTCATTGTTGGTATCATCTTGT
LOC_Os02g34510
Os.5911.1.S1_at--297--431Chr02:20680059..20680083 (25 bp)
ATCTTGTCATCTCGTGCTGGTCAAT
LOC_Os02g34510
Os.5911.1.S1_at--790--531Chr02:20680036..20680060 (25 bp)
ATCCCGAGCGGACTAATTTATCAGG
LOC_Os02g34510
Os.5911.1.S1_at--308--3031Chr02:20680007..20680031 (25 bp)
AATGCCTGTAACACTTGTCTGTCAT
LOC_Os02g34510
Os.5911.1.S1_at--1104--111Chr02:20679962..20679986 (25 bp)
ATTCTTTTGCTGTATCTTTGTGGTT
LOC_Os02g34510
Os.5911.1.S1_at--959--10811Chr02:20679945..20679969 (25 bp)
TTGTGGTTACGTACTGTTGTTCAGA
LOC_Os02g34510
Os.5911.1.S1_at--116--6651Chr02:20679930..20679954 (25 bp)
GTTGTTCAGACTACGTTTTCTTTTG
LOC_Os02g34510
Os.5911.1.S1_at--517--10171Chr02:20679878..20679902 (25 bp)
TATAATTTTGACTCACCCCAGAGCC
LOC_Os02g34510
Os.5911.1.S1_at--315--2071Chr02:20679763..20679787 (25 bp)
ACTTGTGCTATGGACACATCGCTTG
LOC_Os02g34510
Os.5911.1.S1_at--212--3551Chr02:20679747..20679771 (25 bp)
CATCGCTTGCCCCAATAGAGGATTG
LOC_Os02g34510
Target Sequence 
GGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTGTCATCTCGTGCTGGTCAATCCCGAGCGGACTAATTTA
TCAGGCTATAATGCCTGTAACACTTGTCTGTCATGAATATAATGGCATGTCAATATTCTTTTGCTGTATCTTTGTGGTTA
CGTACTGTTGTTCAGACTACGTTTTCTTTTGCTTATTTTTGAGATAGTACAACCAACTTATAATTTTGACTCACCCCAGA
GCCATGGCTACATTTGTTGCATGGGAACATGGACTTATATGGTGCTAGACGATTTGGTGAATAAACAACAAATTTTTGTA
NNGAATATTTATCACTTGTGCTATGGACACATCGCTTGCCCCAATAGAGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis