Browse Element(s) Details


Os.6131.1.S1_at

Description gb:AK067530.1
DB_XREF= gi:32977548
TID=Os.6131.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107M24, full insert sequence.
FL= gb:AK067530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0742011/11predicted 3-dehydroquinate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6131.1.S1_at--1149--3231Chr03:3745323..3745347 (25 bp)
CAAGCAGGCCTTTCAGGGTCAATGC
LOC_Os03g07420
Os.6131.1.S1_at--147--7571Chr03:3745446..3745470 (25 bp)
GGGCCCTGTTCATGCATATGTTGCA
LOC_Os03g07420
Os.6131.1.S1_at--497--251Chr03:3745461..3745485 (25 bp)
ATATGTTGCAGTCCCTGGTGGCCGA
LOC_Os03g07420
Os.6131.1.S1_at--227--8471Chr03:3745479..3745503 (25 bp)
TGGCCGAACTAGTTACCTCTCAGAG
LOC_Os03g07420
Os.6131.1.S1_at--837--10811Chr03:3745546..3745570 (25 bp)
TTGTGGCGTACTGCGATTGTTGGTC
LOC_Os03g07420
Os.6131.1.S1_at--727--1411Chr03:3745745..3745769 (25 bp)
AGACAGTTGCACTTATCACTCCTGA
LOC_Os03g07420
Os.6131.1.S1_at--939--2551Chr03:3745949..3745973 (25 bp)
AACTGCTATACCTGTGACTTCACTG
LOC_Os03g07420
Os.6131.1.S1_at--29--9171Chr03:3746012..3746036 (25 bp)
TGCCCGTCACACTGGAATAGAGATT
LOC_Os03g07420
Os.6131.1.S1_at--409--4651Chr03:3746065..3746089 (25 bp)
GCGTCAGTTATTCAGTTACCTGCTA
LOC_Os03g07420
Os.6131.1.S1_at--75--9091Chr03:3746085..3746109 (25 bp)
TGCTAGCAGGCCAGTCTTTGTTCTT
LOC_Os03g07420
Os.6131.1.S1_at--576--5211Chr03:3746188..3746212 (25 bp)
GAATTCGAGCCATGTACATCTGTAT
LOC_Os03g07420
Target Sequence 
CAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGCATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCA
GAGCTGCAATCAGGTCGGGAAGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGAT
TGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAGCATTTTCCTGCAAAATGCCG
AGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGGAAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGAT
GAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTG
CGTCAGTTATTCAGTTACCTGCTAGCAGGCCAGTCTTTGTTCTTCCCAAACAATTCTTTTGCTAATTCATGGGAGTGAAA
ATTCACACCAACTTATGATAGGGGACTATCTGAATCATCATTGAATTCGAGCCATGTACATCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis