Browse Element(s) Details


Os.6196.1.S1_x_at

Description gb:AK068622.1
DB_XREF= gi:32978639
TID=Os.6196.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154A11, full insert sequence.
FL= gb:AK068622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0124011/11mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g0127010/11mitochondrial substrate carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein
LOC_Os12g01280OsAffx.19441.1.S1_at11/1112+159989..160258hypothetical protein
LOC_Os12g01290OsAffx.19442.1.S1_at11/1112+165056..168377Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6196.1.S1_x_at--584--7992Chr12:136666..136690 (25 bp)
GGAGGCCATTGTTGGTACCATGCAA
LOC_Os12g01240
Os.6196.1.S1_x_at--398--1312Chr12:136639..136663 (25 bp)
AGATGGTCCAAAGGGCTTCTTCCGT
LOC_Os12g01240
Os.6196.1.S1_x_at--191--1332Chr12:136591..136615 (25 bp)
AGAGGTTCCTTTCTATGTTGCTGGA
LOC_Os12g01240
Os.6196.1.S1_x_at--712--6132Chr12:135892..135916 (25 bp)
GAGGGCTTGCAGCAGTTGTCACAAC
LOC_Os12g01240
Os.6196.1.S1_x_at--59--2772Chr12:135851..135875 (25 bp)
AAGACTCGGATGATGACTGCTCCAC
LOC_Os12g01240
Os.6196.1.S1_x_at--1021--4172Chr12:135819..135843 (25 bp)
CCCAGTCTCCATGCAGTTGATAGTT
LOC_Os12g01240
Os.6196.1.S1_x_at--533--10572Chr12:135803..135827 (25 bp)
TTGATAGTTTTCTCCATCCTTCGAA
LOC_Os12g01240
Os.6196.1.S1_x_at--653--672Chr12:135778..135802 (25 bp)
ATGAGGGACCTCTCGGACTGTTCAA
LOC_Os12g01240
Os.6196.1.S1_x_at--390--2532Chr12:135707..135731 (25 bp)
AACTTTGCAGGCTATGAGCTCGCCA
LOC_Os12g01240
Os.6196.1.S1_x_at--901--5711Chr12:135656..135680 (25 bp)
GACTCCGCAGACTCTGTACATGAGA
LOC_Os12g01240
Os.6196.1.S1_x_at--111--2152Chr12:135546..135570 (25 bp)
ACAGAAATGTTTTTGCCCTTGTTGC
LOC_Os12g01240
Target Sequence 
GGAGGCCATTGTTGGTACCATGCAAAAAGATGGTCCAAAGGGCTTCTTCCGTGGCACTGGGGCCACTCTTTGCCGAGAGG
TTCCTTTCTATGTTGCTGGAATGTGTCTTTATGCAGAAGCTAAAAAGGCGGCACAGCATGTGTTGAACAGAGACTTGGAA
CCATGGGAAACTATTGCAGTGGGAGCGTTGTCTGGAGGGCTTGCAGCAGTTGTCACAACTCCCTTTGATGTGATGAAGAC
TCGGATGATGACTGCTCCACCAGGCACCCCAGTCTCCATGCAGTTGATAGTTTTCTCCATCCTTCGAAATGAGGGACCTC
TCGGACTGTTCAAGGGTGCGATCCCCCGCTTCTTCTGGATTGCTCCTCTCGGAGCAATGAACTTTGCAGGCTATGAGCTC
GCCAAGAAAGCAATGATCCAAACTGAGAGTGACTCCGCAGACTCTGTACATGAGAAGAGAACCACAGTGGGTTCCAGAGG
ATGACAGATCCAAATTCACCTGGTTACTCTATATGGTGTAAAGAAAGGACAAGCCATGCAACAGAAATGTTTTTGCCCTT
GTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6196.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis