Browse Element(s) Details


Os.6325.2.A1_x_at

Description gb:BX898346
DB_XREF= gi:40487200
DB_XREF=BX898346
CLONE=y610c11p5
TID=Os.6325.2
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium sensor protein (P0013G02.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3977011/11Calcineurin B-like protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005955cellular_componentcalcineurin complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6325.2.A1_x_at--187--3031Chr01:22755141..22755289 (25 bp)
AATCCAGATGCTTCTCCGTGAACGA
LOC_Os01g39770
Os.6325.2.A1_x_at--83--5791Chr01:22755339..22755360 (22 bp)
GACGACGGACTCATCCACAAGGAAG
LOC_Os01g39770
Os.6325.2.A1_x_at--179--2771Chr01:22756116..22756140 (25 bp)
AAGAGCTCCAGCTGGCATTGTTTAA
LOC_Os01g39770
Os.6325.2.A1_x_at--677--11Chr01:22756132..22756156 (25 bp)
ATTGTTTAAGACTCCAAGCGGCCAG
LOC_Os01g39770
Os.6325.2.A1_x_at--465--9211Chr01:22756144..22756168 (25 bp)
TCCAAGCGGCCAGAATCTTTTTCTT
LOC_Os01g39770
Os.6325.2.A1_x_at--1072--9571Chr01:22756417..22756441 (25 bp)
TCTTCCATCCATTGGCACCATTGGA
LOC_Os01g39770
Os.6325.2.A1_x_at--61--6911Chr01:22756555..22756579 (25 bp)
GTATGACTTGAGACAAACTGGGTTT
LOC_Os01g39770
Os.6325.2.A1_x_at--795--7851Chr01:22756689..22756713 (25 bp)
GGTTATGCAAATGGTTATCGCTATT
LOC_Os01g39770
Os.6325.2.A1_x_at--695--6771Chr01:22756702..22756726 (25 bp)
GTTATCGCTATTTTGTCGGAATCTG
LOC_Os01g39770
Os.6325.2.A1_x_at--163--3651Chr01:22756747..22756770 (24 bp)
CTTCTCGAGGCCATTATTGATAAGA
LOC_Os01g39770
Os.6325.2.A1_x_at--710--6871Chr01:22756925..22756949 (25 bp)
GTATTGCGGCATCCTAATCTATTGA
LOC_Os01g39770
Target Sequence 
AATCCAGATGCTTCTCCGTGAACGAGGTGGAGGCGCTGTTCGAGCTCTACAAGAAGATCAGCTGCTCCATCATCGACGAC
GGACTCATCCACAAGGAAGAGCTCCAGCTGGCATTGTTTAAGACTCCAAGCGGCCAGAATCTTTTTCTTGATAGGGTTTT
TGATTTATTTGATGAAAAGAAAAATGGTGTAATAGAGTTTGATGAGTTTATTCATGNTCTTAGCGTCTTCCATCCATTGG
CACCATTGGAAGACAAGATAAATTTTGCATTTAGGTTGTATGACTTGAGACAAACTGGGTTTNATTGAGCGTGAGGAGGT
TATGCAAATGGTTATCGCTATTTTGTCGGAATCTGATATGAAATTGTCAGAAGAACTTCTCGAGGCCATTATTGATAAGA
CATTTGAAGATGCTGATGCNGATAGGGATGGANNAATAAACCNAACAAGAATGGAAGGAATNCGTATTGCGGCATCCTAA
TCTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6325.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis