Browse Element(s) Details


Os.6511.1.S1_at

Description gb:AK102673.1
DB_XREF= gi:32987882
TID=Os.6511.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6511 (NCBI UniGene Cluster)
UG_TITLE=SS128 mRNA for ribosomal protein L18a, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102C12, full insert sequence.
FL= gb:AK102673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4903011/1160S ribosomal protein L18a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6511.1.S1_at--478--5231Chr05:28036749..28036773 (25 bp)
GAATATCAAGTTCCCGCTCGTGTAC
LOC_Os05g49030
Os.6511.1.S1_at--1030--8271Chr05:28036818..28036842 (25 bp)
GGCATCTAGGCCGAACTTGTTCATG
LOC_Os05g49030
Os.6511.1.S1_at--47--7411Chr05:28036842..28036866 (25 bp)
GTGATCTACCAGTGTGTACCCATGT
LOC_Os05g49030
Os.6511.1.S1_at--854--1811Chr05:28036859..28036883 (25 bp)
ACCCATGTTCTGCAATTTAGCCCAA
LOC_Os05g49030
Os.6511.1.S1_at--739--6331Chr05:28036955..28036979 (25 bp)
GATGCTTAGGCATTTCCAGTTACCC
LOC_Os05g49030
Os.6511.1.S1_at--316--4131Chr05:28036970..28036994 (25 bp)
CCAGTTACCCTTCCAAATGATGCTT
LOC_Os05g49030
Os.6511.1.S1_at--564--8991Chr05:28036995..28037019 (25 bp)
TGCAAACCCTTGAATTTCCTCGTAT
LOC_Os05g49030
Os.6511.1.S1_at--446--1391Chr05:28037031..28037055 (25 bp)
AGACTTCTTGTTACTTCAACCTGGC
LOC_Os05g49030
Os.6511.1.S1_at--752--1111Chr05:28037065..28037089 (25 bp)
AGTGTTGATCCCTGATGTGCTATTA
LOC_Os05g49030
Os.6511.1.S1_at--1107--8871Chr05:28037107..28037131 (25 bp)
TGATGGCACTGTCTTTCTGGTCTGG
LOC_Os05g49030
Os.6511.1.S1_at--972--10651Chr05:28037159..28037183 (25 bp)
TTCCTGGGTGTTAAGTCGCTTTGCA
LOC_Os05g49030
Target Sequence 
GAATATCAAGTTCCCGCTCGTGTACCGCAAGGTCAGGCCGCCCACCAGGAAGCTGAAGACCACCTTCAAGGCATCTAGGC
CGAACTTGTTCATGTGATCTACCAGTGTGTACCCATGTTCTGCAATTTAGCCCAAGAATCAAAAGATTTTGTCTGTGGAA
GTTTTGGTGCCCTGCTGGTTAGGCATTTCCAGTTTCATATCCAAATGATGCTTAGGCATTTCCAGTTACCCTTCCAAATG
ATGCTTTGCAAACCCTTGAATTTCCTCGTATTAGTAATCAGCAGACTTCTTGTTACTTCAACCTGGCTCACTTGGAAGTG
TTGATCCCTGATGTGCTATTATTTATCTCTGTAATTTGTGATGGCACTGTCTTTCTGGTCTGGTCGAACGATTACATATT
TTACTTCCNTGTTCCTGGGTGTTAAGTCGCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis