Browse Element(s) Details


Os.6678.1.S1_at

Description gb:AK063787.1
DB_XREF= gi:32973805
TID=Os.6678.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E01, full insert sequence.
FL= gb:AK122146.1 gb:AK063787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g066504/11COX VIIa, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6678.1.S1_at--510--1471Chr02:3345421..3345445 (25 bp)
AGAATCACCGTTTTTGCCGCGCGAG
LOC_Os02g06650
Os.6678.1.S1_at--733--2511Chr02:3345366..3345390 (25 bp)
AACTTGACCAAGCACACGTATCTGA
LOC_Os02g06650
Os.6678.1.S1_at--1148--1071Chr02:3345340..3345364 (25 bp)
AGGGCGTTATGATGTGGTCACCTCC
LOC_Os02g06650
Os.6678.1.S1_at--398--4531Chr02:3345294..3345318 (25 bp)
GCCGCCTCCAGCTTGTTTATGATAG
LOC_Os02g06650
Os.6678.1.S1_at--552--811Chr02:3345121..3345145 (25 bp)
ATGGTTTCCTCTCATTTCAGTACTT
NONE
Os.6678.1.S1_at--286--7711Chr02:3345088..3345112 (25 bp)
GGGTGATAGCTTCAAGGCTTCCTAT
NONE
Os.6678.1.S1_at--409--3211Chr02:3345076..3345100 (25 bp)
CAAGGCTTCCTATGGTGTCTTTTAA
NONE
Os.6678.1.S1_at--494--9751Chr02:3344921..3344945 (25 bp)
TAATTTCTACATTCTTACCTCACCT
NONE
Os.6678.1.S1_at--54--9511Chr02:3344893..3344917 (25 bp)
TCTCCCTTTCTCAGCAGTATTCATA
NONE
Os.6678.1.S1_at--677--7411Chr02:3344798..3344822 (25 bp)
GTGTTGGTAGCCTAATCTGCATGTT
NONE
Os.6678.1.S1_at--1048--6811Chr02:3344776..3344800 (25 bp)
GTTTTTGTTCTGGAGCACTTTAGTT
NONE
Target Sequence 
AGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGA
AAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGG
GTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGG
TGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTG
TTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTAT
CTATTAATTTCTACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTAT
ATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCATGTTTTTGTTCT
GGAGCACTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis