Browse Element(s) Details


Os.7185.1.S1_a_at

Description gb:AY327045.1
DB_XREF= gi:32966066
TID=Os.7185.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7185 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) disease-resistant protein DS3 mRNA, complete cds.
PROD=disease-resistant protein DS3
FL= gb:AY327045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2248411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7185.1.S1_a_at--58--10111Chr10:11323980..11324004 (25 bp)
TATGGTACTGCACCTATCAGGATTG
LOC_Os10g22484
Os.7185.1.S1_a_at--579--7911Chr10:11323961..11323985 (25 bp)
GGATTGGACACTTGTTAGGCCTCAA
LOC_Os10g22484
Os.7185.1.S1_a_at--398--2231Chr10:11323922..11323946 (25 bp)
AAATTCATGGTGCAAGTGTCGACGC
LOC_Os10g22484
Os.7185.1.S1_a_at--660--6091Chr10:11323896..11323920 (25 bp)
GAGTCTGCATTGACATCTGCTGTTA
LOC_Os10g22484
Os.7185.1.S1_a_at--660--5671Chr10:11323885..11323909 (25 bp)
GACATCTGCTGTTAGCAATCACCCA
LOC_Os10g22484
Os.7185.1.S1_a_at--504--3151Chr10:11323870..11323894 (25 bp)
CAATCACCCAAGCAATCCTAGAATC
LOC_Os10g22484
Os.7185.1.S1_a_at--532--631Chr10:11323766..11323790 (25 bp)
ATGCTATCATGAGCGCCAACTTCGA
LOC_Os10g22484
Os.7185.1.S1_a_at--2--2831Chr10:11323694..11323718 (25 bp)
AAGTTGGAAGTATTGTGCCTCTGCC
LOC_Os10g22484
Os.7185.1.S1_a_at--781--6071Chr10:11323635..11323659 (25 bp)
GAGTATGCACCAAAAGACCCAGATA
LOC_Os10g22484
Os.7185.1.S1_a_at--24--7191Chr10:11323432..11323456 (25 bp)
GTCTGTATCATCAATGTATCCGTGG
LOC_Os10g22484
Os.7185.1.S1_a_at--902--6891Chr10:11323417..11323441 (25 bp)
GTATCCGTGGCATCTGAAGTTTCTA
LOC_Os10g22484
Target Sequence 
TATGGTACTGCACCTATCAGGATTGGACACTTGTTAGGCCTCAAAGAAATCTCAGTAAAAATTCATGGTGCAAGTGTCGA
CGCAGAGTCTGCATTGACATCTGCTGTTAGCAATCACCCAAGCAATCCTAGAATCAACGTACAGTTGGTGGATAAGATTT
TTTATGGTGATAGAGTGACAAAAGAGAAAGATCATGGGTCTGAGGAAGAACAAAATGCTATCATGAGCGCCAACTTCGAT
GAATATCATCAAACTCAAGATAAAGAGTCAAGTGATGCGAACAAACAAGTTGGAAGTATTGTGCCTCTGCCACGGGAGCA
AGAACATGGGATTTTAGAACATGATGAGTATGCACCAAAAGACCCAGATAAGTACAAACAATCTGATATCAGGTCTGTAT
CATCAATGTATCCGTGGCATCTGAAGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7185.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis