Browse Element(s) Details


Os.7297.1.S1_at

Description gb:AY277897.2
DB_XREF= gi:41056567
GEN=rad50
TID=Os.7297.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7297 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) DNA repair-recombination protein (rad50) mRNA, complete cds.
PROD=DNA repair-recombination protein
FL= gb:AK106581.1 gb:AY277897.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2946411/11DNA repair protein RAD50, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29430OsAffx.7693.1.S1_x_at1/112+17477770..17478036hypothetical protein
LOC_Os02g29440OsAffx.12273.1.S1_at10/112+17479048..17479951hypothetical protein
LOC_Os02g29450NANA2+17482176..17482637hypothetical protein
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g29490OsAffx.12276.1.S1_at11/112+17513503..17513760hypothetical protein
LOC_Os02g29500Os.49856.1.S1_at11/112+17514577..17515783expressed protein
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0007129biological_processsynapsis
GO:0007131biological_processmeiotic recombination
GO:0042306biological_processregulation of protein import into nucleus
GO:0000795cellular_componentsynaptonemal complex
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7297.1.S1_at--734--5991Chr02:17484431..17484455 (25 bp)
GAGACGCGGTTCTTGGATCATTTTT
LOC_Os02g29464
Os.7297.1.S1_at--149--151Chr02:17484403..17484427 (25 bp)
ATTACTATCGCAAAGCCTGCCTTTT
LOC_Os02g29464
Os.7297.1.S1_at--550--9531Chr02:17484376..17484400 (25 bp)
TCTACCAGCCAATGTGCTTGCAGTT
LOC_Os02g29464
Os.7297.1.S1_at--1157--4911Chr02:17484361..17484385 (25 bp)
GCTTGCAGTTCATATTCGGCTAGGA
LOC_Os02g29464
Os.7297.1.S1_at--812--6331Chr02:17484338..17484362 (25 bp)
GATGCTTGCCAAGTCGAGCTGAAGA
LOC_Os02g29464
Os.7297.1.S1_at--595--7811Chr02:17484277..17484301 (25 bp)
GGTAAGTTTGTTTCCATCTTGGCCT
LOC_Os02g29464
Os.7297.1.S1_at--438--431Chr02:17484262..17484286 (25 bp)
ATCTTGGCCTGTGCCAGGGATCCTG
LOC_Os02g29464
Os.7297.1.S1_at--949--7651Chr02:17484246..17484270 (25 bp)
GGGATCCTGATTTTGCCTATGACCT
LOC_Os02g29464
Os.7297.1.S1_at--812--4451Chr02:17484232..17484256 (25 bp)
GCCTATGACCTCATCGTTGTGTATA
LOC_Os02g29464
Os.7297.1.S1_at--266--6191Chr02:17484191..17484215 (25 bp)
GAGGCACCGTACACACTTTATTTAT
LOC_Os02g29464
Os.7297.1.S1_at--624--331Chr02:17484106..17484130 (25 bp)
ATACTTATTGCTGGGTCTTTTGCGT
LOC_Os02g29464
Target Sequence 
GAGACGCGGTTCTTGGATCATTTTTAACATTACTATCGCAAAGCCTGCCTTTTGCTCTACCAGCCAATGTGCTTGCAGTT
CATATTCGGCTAGGATGCTTGCCAAGTCGAGCTGAAGAGAGGAGTTCAACAGTTGACAAGNCTGACGTTTGCATGGTAAG
TTTGTTTCCATCTTGGCCTGTGCCAGGGATCCTGATTTTGCCTATGACCTCATCGTTGTGTATATGATATTAATGTAGAG
GAGGCACCGTACACACTTTATTTATGCTGTTGATTACAGCATCTAAGAATTGCAACTAATGTAGCATAATTCAGTGGATG
TAACTATACTTATTGCTGGGTCTTTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis