Browse Element(s) Details


Os.7307.2.S1_x_at

Description gb:NM_193663.1
DB_XREF= gi:34914409
GEN=P0516D04.3
TID=Os.7307.2
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.3 (P0516D04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0516D04.3 (P0516D04.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3380010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7307.2.S1_x_at--324--2351Chr01:18935017..18935041 (25 bp)
AAAGCAATGCGCGAGGCCGCAGAAT
LOC_Os01g33800
Os.7307.2.S1_x_at--849--6211NONE
GAGGCGGCTACAAGGTGTATCTCTT
NONE
Os.7307.2.S1_x_at--218--6291Chr01:18936203..18936227 (25 bp)
GATGATGAACTTCTGGCAGTTCCAA
LOC_Os01g33800
Os.7307.2.S1_x_at--679--8251Chr01:18936217..18936241 (25 bp)
GGCAGTTCCAAAACAGGCACAGGCA
LOC_Os01g33800
Os.7307.2.S1_x_at--1132--8991Chr01:18936253..18936277 (25 bp)
TGAATGGATGACCACATTGCCTCCT
LOC_Os01g33800
Os.7307.2.S1_x_at--1054--5831Chr01:18936262..18936286 (25 bp)
GACCACATTGCCTCCTGAAAGAAAA
LOC_Os01g33800
Os.7307.2.S1_x_at--446--6971Chr01:18936407..18936431 (25 bp)
GTACCAATGCATTCGACTACGTCAT
LOC_Os01g33800
Os.7307.2.S1_x_at--796--1911Chr01:18936454..18936478 (25 bp)
ACGTGGTGATACAAGTGTCTGGACA
LOC_Os01g33800
Os.7307.2.S1_x_at--671--7451Chr01:18936468..18936492 (25 bp)
GTGTCTGGACAGATACTCCTCTTGA
LOC_Os01g33800
Os.7307.2.S1_x_at--156--1431Chr01:18937737..18937757 (21 bp)
AGAACTACTTAGAAGCCTACAACAA
LOC_Os01g33800
Os.7307.2.S1_x_at--623--2211Chr01:18938010..18938034 (25 bp)
ACAAGGATTGTCGTCCCGATTTTCG
LOC_Os01g33800
Target Sequence 
AAAGCAATGCGCGAGGCCGCAGAATGGAGGCGGCTACAAGGTGTATCTCTTGAGGGTGATGATGAACTTCTGGCAGTTCC
AAAACAGGCACAGGCACCTAAAAGAGATGAATGGATGACCACATTGCCTCCTGAAAGAAAACCTGGAGTACCAATGCATT
CGACTACGTCATTTAGTATGAATGGTAAAGAAGGACGTGGTGATACAAGTGTCTGGACAGATACTCCTCTTGAAAGAGCT
CAAAAAGCACAACAGAACTACTTAGAAGCCTACAACAAAGCAAAGGCAATTGCAGATGCAGATGAAGAAAAGATTAAAAC
CTCAGACGCTTCATTGGTGGATACATACAATTCCTCCAAGCGATCAGTATCTCTCGTGCAAAAGCATCGAGAAAGCAAAA
ANNAGAAAAANAANNAGAAGCAGCGGGATAAAGANGAATGGGNAGGAAACCACCCATGGAAGCNTTGGGACCGTGAGAAG
GACCTGACTGCTGGGCGGCAAAATGTCAATTTAGATCCTGAGAACATGGCACAAGGATTGTCGTCCCGATTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7307.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis