Browse Element(s) Details


Os.7308.1.S1_x_at

Description gb:AK109392.2
DB_XREF= gi:42821707
TID=Os.7308.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-H08, full insert sequence.
FL= gb:AK064858.1 gb:AK109392.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3115011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7308.1.S1_x_at--470--3011Chr03:17693996..17694020 (25 bp)
AATGCTCACCGCAGGGTGTTTCTAA
LOC_Os03g31150
Os.7308.1.S1_x_at--892--8771Chr03:17694012..17694036 (25 bp)
TGTTTCTAACATCTCCTGGGCTTTG
LOC_Os03g31150
Os.7308.1.S1_x_at--290--1771Chr03:17694053..17694077 (25 bp)
ACCTGCTCTACTTGCCGGAGATGGA
LOC_Os03g31150
Os.7308.1.S1_x_at--825--6471Chr03:17694076..17694100 (25 bp)
GATAGGATTGCCCAGGTAGCCATCA
LOC_Os03g31150
Os.7308.1.S1_x_at--297--6971Chr03:17694091..17694115 (25 bp)
GTAGCCATCACCAAGGTTGACAGCT
LOC_Os03g31150
Os.7308.1.S1_x_at--32--2991Chr03:17694136..17694160 (25 bp)
AATGTAGCCGGATCATTCGCTTCCA
LOC_Os03g31150
Os.7308.1.S1_x_at--27--5851Chr03:17694178..17694202 (25 bp)
GACCTTATCTCAGCATTGACCCGGA
LOC_Os03g31150
Os.7308.1.S1_x_at--48--5951Chr03:17694203..17694227 (25 bp)
GAGCAGCAGAACTAGTGTACACCTT
LOC_Os03g31150
Os.7308.1.S1_x_at--824--7971Chr03:17694259..17694283 (25 bp)
GGATGCGCTTCTCTTAACGAGTGTC
LOC_Os03g31150
Os.7308.1.S1_x_at--391--6912Chr03:17694285..17694309 (25 bp)
GTATCCTCTACTTGATGCACTTGAT
LOC_Os03g31150
Os.7308.1.S1_x_at--409--1071Chr03:17694319..17694343 (25 bp)
AGGGATGCTCCTAGTTTCGATTGCC
LOC_Os03g31150
Target Sequence 
AATGCTCACCGCAGGGTGTTTCTAACATCTCCTGGGCTTTGTCCAAGATTGGGGGTGACCTGCTCTACTTGCCGGAGATG
GATAGGATTGCCCAGGTAGCCATCACCAAGGTTGACAGCTTCAATGCACAGAATGTTGCCAATGTAGCCGGATCATTCGC
TTCCATGCGCCACTCAGCACCGGACCTTATCTCAGCATTGACCCGGAGAGCAGCAGAACTAGTGTACACCTTCAAGGAGC
AAGAGCTCGCCCAGTTCTTGTGGGGATGCGCTTCTCTTAACGAGTGTCCGTATCCTCTACTTGATGCACTTGATACTGCT
TGCAGGGATGCTCCTAGTTTCGATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7308.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis