Browse Element(s) Details


Os.7555.1.S1_at

Description gb:AK107813.1
DB_XREF= gi:32993022
TID=Os.7555.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F04, full insert sequence.
FL= gb:AK107813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5240011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7555.1.S1_at--1061--2891Chr02:32063981..32064005 (25 bp)
AAGGTGCGGTCCATGCTGGCCATCG
LOC_Os02g52400
Os.7555.1.S1_at--763--371Chr02:32063883..32063907 (25 bp)
ATCACCGGCGTCATTGCAGGATTAG
LOC_Os02g52400
Os.7555.1.S1_at--127--4591Chr02:32063868..32063892 (25 bp)
GCAGGATTAGCCCTTTCCGTTCGGA
LOC_Os02g52400
Os.7555.1.S1_at--1098--10651Chr02:32063854..32063878 (25 bp)
TTCCGTTCGGATTAACCTTGATTGA
LOC_Os02g52400
Os.7555.1.S1_at--659--3071Chr02:32063816..32063840 (25 bp)
AATCAGCTACATCTAGTGGCGTTTA
LOC_Os02g52400
Os.7555.1.S1_at--132--1511Chr02:32063765..32063789 (25 bp)
AGCACCATGATTTGTGGCATTTATC
LOC_Os02g52400
Os.7555.1.S1_at--285--3431Chr02:32063719..32063743 (25 bp)
CAGATGATCGTCTATTCTTGGTTCT
LOC_Os02g52400
Os.7555.1.S1_at--1102--10551Chr02:32063690..32063714 (25 bp)
TTCTTGCTGCCTTTCGGTTACATAC
LOC_Os02g52400
Os.7555.1.S1_at--733--6771Chr02:32063674..32063698 (25 bp)
GTTACATACTTCGACTCTTCATCAA
LOC_Os02g52400
Os.7555.1.S1_at--9--3171Chr02:32063573..32063597 (25 bp)
AATTGTGCGATTCGTGCCTACGTGC
LOC_Os02g52400
Os.7555.1.S1_at--841--9931Chr02:32063555..32063579 (25 bp)
TACGTGCACCCAATCAGTGAATCTG
LOC_Os02g52400
Target Sequence 
AAGGTGCGGTCCATGCTGGCCATCGCGTCCGCGCAGCTGCACAAGCAGCAGCATCAGGCGCAGCAGCAGCTGCAACGCGG
CGTCAGGAAGTGAGAAGCATCACCGGCGTCATTGCAGGATTAGCCCTTTCCGTTCGGATTAACCTTGATTGAGTTTGTGA
TTATTAATCAGCTACATCTAGTGGCGTTTAATTAGTGTTGAAAATTTGTTACTAGAAGCACCATGATTTGTGGCATTTAT
CATATTCACTATCACAAGATGTCAGATGATCGTCTATTCTTGGTTCTTGGCTTCTTGCTGCCTTTCGGTTACATACTTCG
ACTCTTCATCAAGAGTGACCAATGGCAGATTGTAGCTTTGTAAGATGAAACTTGACACAGCAGAGTGATTTAACGCAGGT
AATGCGCGAATTGTGCGATTCGTGCCTACGTGCACCCAATCAGTGAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis