Browse Element(s) Details


Os.7582.1.S1_at

Description gb:AK070464.1
DB_XREF= gi:32980488
TID=Os.7582.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054K19, full insert sequence.
FL= gb:AK104389.1 gb:AK070464.1 gb:AK106140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0961011/11expressed protein
LOC_Os07g419702/11hypothetical protein
LOC_Os06g381701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g355901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7582.1.S1_at--601--9131Chr08:5557384..5557408 (25 bp)
TGCGTCGTTCCCTCTAGAGAACAGT
LOC_Os08g09610
Os.7582.1.S1_at--132--4031Chr08:5557354..5557378 (25 bp)
CGTCAATGGTTGTGCTCTTCACTGC
LOC_Os08g09610
Os.7582.1.S1_at--891--9551Chr08:5557339..5557363 (25 bp)
TCTTCACTGCTTCAGGGTGGCTGGA
LOC_Os08g09610
Os.7582.1.S1_at--8--6851Chr08:5557292..5557316 (25 bp)
GTTTCTGGGCAGTTGTATCCACGCT
LOC_Os08g09610
Os.7582.1.S1_at--111--3954Chr02:9450032..9450056 (25 bp)
CGGCTCAACAGCAAATCTCCAATTT
NONE
Os.7582.1.S1_at--17--3431Chr08:5557142..5557166 (25 bp)
CAGACTCTGTGAAGGCGTCCGAAGA
LOC_Os08g09610
Os.7582.1.S1_at--824--2891Chr08:5557074..5557098 (25 bp)
AAGGTTCTAATCGTCGTGGCTTCGC
LOC_Os08g09610
Os.7582.1.S1_at--850--10552Chr08:5557026..5557050 (25 bp)
TTCTACGCTGCCTAGTTTCAGGAGG
LOC_Os08g09610
Os.7582.1.S1_at--910--1151Chr08:5556987..5557011 (25 bp)
AGTCTAGTTTTCTCTGATGTGCATC
LOC_Os08g09610
Os.7582.1.S1_at--894--7891Chr08:5556957..5556981 (25 bp)
GGTTCTTTCTGTTGGCGATGTACGG
LOC_Os08g09610
Os.7582.1.S1_at--67--4212Chr06:22602253..22602274 (22 bp)
CCCCTTGATCTGTTGCTCTAATATA
LOC_Os06g38170
Target Sequence 
TGCGTCGTTCCCTCTAGAGAACAGTTCATTCGTCAATGGTTGTGCTCTTCACTGCTTCAGGGTGGCTGGATCTGGGGTCC
TTCTCCCTCTTCGTTTCTGGGCAGTTGTATCCACGCTGGGTGGGCCATTCGGGTTGAGCTCATGCTCCTCAGATTCAAAG
GCGAACTCCGTGGTGAAGTTTGGTTAAGTCCGGTGAAGCTTACACCAAAATCTACGGCTCAACAGCAAATCTCCAATTTG
TGCAGACTCTGTGAAGGCGTCCGAAGAGGATTACCGGTTCGTCAAGCGGTCTGCATGTCAAAGGAGACCCAAGGTTCTAA
TCGTCGTGGCTTCGCCGCAGCTCCTGTCGATTCGCGCCTTCTACGCTGCCTAGTTTCAGGAGGTTGTTTGTACTCTTAGT
CTAGTTTTCTCTGATGTGCATCTTGTTGGTTCTTTCTGTTGGCGATGTACGGGGCTTGCCCCCTTGATCTGTTGCTCTAA
TATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis